Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1969 ATGCAAGATCCAGCGCCATCAAACCCTATCCACACTCCCAATTCCAATCAAATTCCTCCACTCAATGTTGCAGCACCGCCGCCGAAGACTCACAAACCGCCGCCGGTGGCGAATGCGACGGCCTCCTCTTCATCAATGTTTGCCAATGCGAATACTGGCAATACCTCATTTATGCCTAGAGTAGGCTCTCATCATCGGAGAGCTCATTCAGAAGTTAGTTTCCGGTTGCCGGAGGATATGATGGATATATCCGCGTCGGATCCGTTCAATGGCGGTTCGTCCACCGCAAGTCTGGAGGAGATCGGATCGGAAGATGATCTGTTTTCGACCTACATTGATGTGAAGAAGCTTGGAGGTAACGGAGGAGGGAATTTTGTAGATCATAATGGTAATGGAGGAAGTGAAGGTGCTGGTGGTAGTGAAGGGGAGAAGACTTCGAAGCCAAGGCATCGGCATAGTGTTTCGGTGGATGGAACGACGTCGTCGTCGAGTATGTTTGGGGAAATTATGGAAGCGAAGAAAGCTATGCCTCCTGATAAGTTGGCTGAGCTTTGGTCCAGTGATCCCAAACGCGCTAAAAGGATATTGGCAAATCGACAGTCTGCTGCTCGCTCAAAAGAGAGGAAAGCAAGATATATACAAGAATTGGAGCGCAAAGTGCAAACCCTTCAAACAGAAGCAACTACTCTATCAGCCCAATTGACTTTGTTCCAGCGAGACACAACGGGTCTCAGTACTGAAAATACAGAGCTTAAACTTCGGTTACAGGCTATGGAGCAACAAGCCCAATTGCGTGATGCTTTGAACGAAGCATTAAAGAAGGAAGTTGAGAGGCTTAAAATCGCTACCGGGGAAATGATGAGCCCGTCTGAGTCTTTTAACTTAGGAATGCATCACATGGCGTACGCCCCGTCATCTTTCATTCAACTTTCACAGCAACAACCAGGATCTGTTGGCCTTCAAAATATGCAAATGCCACCATATAGCCATTCTCCATCCAATATGACTACTCACCCTCTACTTCCATCAGAGTCTCATTCACTCTCTGAGGTTCTGCAGACCGACTCTCTTGGCCGATTGCAGGGTCTCGACATCAGTAGTAAAGGATCGTCGCTTGTGAAATCCGAGGGTCCTTCACTCTCTGCTAGTGAAAGCAGTACAACCTTTTGA 1170 47.78 MQDPAPSNPIHTPNSNQIPPLNVAAPPPKTHKPPPVANATASSSSMFANANTGNTSFMPRVGSHHRRAHSEVSFRLPEDMMDISASDPFNGGSSTASLEEIGSEDDLFSTYIDVKKLGGNGGGNFVDHNGNGGSEGAGGSEGEKTSKPRHRHSVSVDGTTSSSSMFGEIMEAKKAMPPDKLAELWSSDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKIATGEMMSPSESFNLGMHHMAYAPSSFIQLSQQQPGSVGLQNMQMPPYSHSPSNMTTHPLLPSESHSLSEVLQTDSLGRLQGLDISSKGSSLVKSEGPSLSASESSTTF 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32820064 32823280 + CaPI482276_02g019690.1 Cam02g1969 121711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1969 389 MobiDBLite consensus disorder prediction 1 63 - -
Cam02g1969 389 SUPERFAMILY Leucine zipper domain 190 241 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1969 389 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 188 251 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1969 389 Coils Coil 206 233 - -
Cam02g1969 389 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 37 342 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam02g1969 389 SMART brlzneu 186 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1969 389 MobiDBLite consensus disorder prediction 123 165 - -
Cam02g1969 389 MobiDBLite consensus disorder prediction 1 19 - -
Cam02g1969 389 CDD bZIP_plant_RF2 191 240 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g1969 389 MobiDBLite consensus disorder prediction 36 59 - -
Cam02g1969 389 MobiDBLite consensus disorder prediction 317 349 - -
Cam02g1969 389 MobiDBLite consensus disorder prediction 366 389 - -
Cam02g1969 389 Coils Coil 254 285 - -
Cam02g1969 389 FunFam probable transcription factor PosF21 189 242 - -
Cam02g1969 389 Gene3D - 189 242 - -
Cam02g1969 389 MobiDBLite consensus disorder prediction 20 34 - -
Cam02g1969 389 Pfam bZIP transcription factor 190 238 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1969 Cam-Chr2:32820064 Cam07g0518 Cam-Chr7:7480326 8.40E-76 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51558 PF00170 bZIP_1 1.30E-08 CL0018 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1969 - - - 0.0