Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1975 ATGGAGAATAAGGCAAGTGTGATGGTTCAACGATATGAATTAGGGAGATTGCTTGGCCAAGGAACCTTCGCAAAGGTGTATTATGCGAGGAATACAGGAAACAATCAAAGTGTGGCCATTAAGGTGATTGATAAAGAAAAGATTACGAAGGCTTCGCTAATCGATCAGATTAAGCGTGAAATATCGATTATGAGACTAGTTAGACATCCTAATATTCTACGTCTATATGAGGTTATGGCCACCAAGACTAAGATCTACTTTGTTTTGGAATATGCTAAAGGTGGTGAGCTCTTTGACAAAGTTGCTAAAGGGAGGCTGCAGGAGGACATTGCTTGGAAATACTTTTATCAGTTAATCAATGCTGTTGATTTTTGTCACAGCAGGGGAGTGTATCACCGTGATATAAAGCCGGAGAACCTACTGCTTGATGAAAATGAGAATCTTAAGGTGTCTGATTTTGGTTTAAGTGCTTTAGCTGAGTCCAAGCGTCAAGACGGGTTGCTTCACACGACTTGTGGTACACCAGCTTATGTTGCCCCTGAAGTCATCAATAGGAAGGGCTATGATGGTGCAAAAGCTGATATCTGGTCTTGTGGAGTAGTTTTGTTTGTCCTATTGGCAGGTTATCTCCCATTCCACAATTCGAATTTGATGGAGATGTATCGGAAGATTGGAAAAGCAGAGTATAAATGCCCTAGTTGGTTCCCTCGTGAAGTGCGGCGGTTGCTAAGCAGGATGCTTGATCCAGACCCCATTGCTAGGACTTCAATAGCAATGATAAGACAAAGTTCTTGGTTCAAAAAGGGATTGAGGTCTAAGAATCTAAGAAGTGGAATAGAAAGTAATGCTGTAGCGTCTGAAGATGCAGCAGCTGTTTCTGGACCGTCCGAGAGAAGTGTGCCAGCAGAAGGAAATCAAGAGCCAGATAGACCTCCAACTTTGAATGCTTTCGATATCATCTCCCTTTCCGCGGGGTTCAATTTATCCAGTTTATTTGAAGACAATTCAAAGAAGAAAGAAACATTGTTTACTTGTAGAAAACCAGCCTCTGTTATTCTCTCAAAACTAGAAGAAATGGCTAAACTTCTTCGGTTTCGAGTACAGAAGAAAGAAGCAGGCCTATTGAAATTTGAGGCACTAACAGAGGGAAGAAAGGGGGTATTATCCATTGATACAGAGATCTTCGAGGTTACTCCATCTTTTTATTTGGTGGAAATGAAAAAATCAAACGGAGACACATTGGAATATCAGAAAATATTGAAAGAGGACATAAGGCCAGCTCTACAGGATATTGTATGGGTTTGGCGAGGAGAGCAGGAGCAGCAGCAACAAAATCCTCAGCCTCAGCCTCAGCCTCTTCAACCGCAGGATCGGGTTCGAGATCCTTATACAGAGCAAGAGGGCTCAGAAGCAGGAGTAACAAAAGCTGCTCTCATATTGGCAATTTGGCATAGGGGTTTGGTTTGTTTGGCAAAAAGGAGGAGACACGTTTGCAAATGA 1500 42.2 MENKASVMVQRYELGRLLGQGTFAKVYYARNTGNNQSVAIKVIDKEKITKASLIDQIKREISIMRLVRHPNILRLYEVMATKTKIYFVLEYAKGGELFDKVAKGRLQEDIAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGVVLFVLLAGYLPFHNSNLMEMYRKIGKAEYKCPSWFPREVRRLLSRMLDPDPIARTSIAMIRQSSWFKKGLRSKNLRSGIESNAVASEDAAAVSGPSERSVPAEGNQEPDRPPTLNAFDIISLSAGFNLSSLFEDNSKKKETLFTCRKPASVILSKLEEMAKLLRFRVQKKEAGLLKFEALTEGRKGVLSIDTEIFEVTPSFYLVEMKKSNGDTLEYQKILKEDIRPALQDIVWVWRGEQEQQQQNPQPQPQPLQPQDRVRDPYTEQEGSEAGVTKAALILAIWHRGLVCLAKRRRHVCK 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32885784 32887709 - CaPI482276_02g019750.1 Cam02g1975 121717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1975 499 CDD CIPK_C 315 429 - -
Cam02g1975 499 SUPERFAMILY Protein kinase-like (PK-like) 9 267 IPR011009 -
Cam02g1975 499 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g1975 499 FunFam Non-specific serine/threonine protein kinase 5 309 - -
Cam02g1975 499 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g1975 499 Pfam NAF domain 311 369 IPR004041 GO:0007165(InterPro)
Cam02g1975 499 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Cam02g1975 499 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g1975 499 Gene3D Transferase(Phosphotransferase) domain 1 2 302 - -
Cam02g1975 499 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165(InterPro)
Cam02g1975 499 Gene3D Kinase associated domain 1, KA1 309 434 - -
Cam02g1975 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam02g1975 499 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Cam02g1975 499 FunFam Non-specific serine/threonine protein kinase 309 433 - -
Cam02g1975 499 MobiDBLite consensus disorder prediction 286 311 - -
Cam02g1975 499 MobiDBLite consensus disorder prediction 439 470 - -
Cam02g1975 499 CDD STKc_SnRK3 11 265 - -
Cam02g1975 499 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 422 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1975 Cam-Chr2:32885784 Cam04g0654 Cam-Chr4:20732385 1.10E-173 dispersed
Cam02g1974 Cam-Chr2:32882255 Cam02g1975 Cam-Chr2:32885784 8.70E-111 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84989 PF00069 Pkinase 1.20E-74 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1975 - - - 0.0