Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1979 ATGGCCATTATTACACCTTCTTCATGTAACAAAATGGTCGTAGCTTTAGCATTAGTCTTATTGGTCGCGTGCACAGGGACTTCCTCAGCTCATCTCTCTCCCAATTTCTACTACAAGAGTTGCCCTAAACTCCTTACCGTTGTCAGAGCTGGTATTCATTCTGCTGTGGCTAAGGAAGCTCGCATGGGCGCTTCCCTTCTCCGCCTTCACTTTCATGACTGCTTTGTTAACGGTTGTGATGGATCGATTCTTTTAGAAGATACTCCTACATTTACAGGAGAGCAAACAGCAGCTCCCAACAATAGATCCGTTCGAGGCTTCAACGTAATTGAGAGCATAAAGAAAAATGTTGAAAAAGTTTGCCCTGGTGTTGTCTCCTGTGCTGATATTTTGACTCTTTCTGCTCGTGACTCTGTCGTAGCTCTTGGAGGCCCAAGTTGGAAGGTAAAATTAGGAAGAAGAGATTCTAAAACAGCCAGCTTCTCCGATGTCACTGGTGCTATTCCCCCGCCAACCTCGACCCTCAACACCCTTATCAACCGATTCAACACCAAAGGCCTCTCCCCTCGGGACTTGGTTGCCTTATCTGGGGCTCACACAATTGGGCAAGCAAGATGTTTGTTTTTCAAGAATCGTATATATAACGAGAGCAACATCGACGAGTCGTTCGCTGAGGAGAGACAAAAGAACTGTCCAACCAAGGGAGGAGATGACAATCGTGCTCCTTTGGACTTTAGAACCCCAAAGCTTTTTGACAACTACTATTACAAGAACCTCTTGGAGAAAAAGGCTTTGCTCCGCTCTGATCAGGTGCTCCATAATGGCGGATCCACCGATTCCTTGGTTGAACTCTATAGTGACAATAGTGATGCATTTGAGTCTGACTTTGTGGCGGCTATGATCAAGATGGGTGACATTCAACCGCTCACTGGATCACAGGGTGAGATTCGTAAGATTTGCAGCCGACCCAACTAA 975 46.05 MAIITPSSCNKMVVALALVLLVACTGTSSAHLSPNFYYKSCPKLLTVVRAGIHSAVAKEARMGASLLRLHFHDCFVNGCDGSILLEDTPTFTGEQTAAPNNRSVRGFNVIESIKKNVEKVCPGVVSCADILTLSARDSVVALGGPSWKVKLGRRDSKTASFSDVTGAIPPPTSTLNTLINRFNTKGLSPRDLVALSGAHTIGQARCLFFKNRIYNESNIDESFAEERQKNCPTKGGDDNRAPLDFRTPKLFDNYYYKNLLEKKALLRSDQVLHNGGSTDSLVELYSDNSDAFESDFVAAMIKMGDIQPLTGSQGEIRKICSRPN 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32902987 32904380 - CaPI482276_02g019790.1 Cam02g1979 121721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1979 324 Gene3D Peroxidase, domain 2 169 303 - -
Cam02g1979 324 Pfam Peroxidase 48 288 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1979 324 FunFam Peroxidase 35 177 - -
Cam02g1979 324 FunFam Peroxidase 169 303 - -
Cam02g1979 324 CDD secretory_peroxidase 31 322 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cam02g1979 324 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
Cam02g1979 324 SUPERFAMILY Heme-dependent peroxidases 32 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1979 324 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601(InterPro)
Cam02g1979 324 ProSiteProfiles Plant heme peroxidase family profile. 31 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1979 324 PANTHER PEROXIDASE 72-RELATED 15 322 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1979 324 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1979 324 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1979 324 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1979 324 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1979 324 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1979 324 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1979 324 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1979 324 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1979 324 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1979 324 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1979 324 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1979 324 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1979 324 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1979 324 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1979 324 Gene3D - 35 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1979 Cam-Chr2:32902987 Cam02g1981 Cam-Chr2:32912262 3.00E-164 dispersed
Cam02g1978 Cam-Chr2:32895995 Cam02g1979 Cam-Chr2:32902987 1.40E-132 tandem
Cam02g1979 Cam-Chr2:32902987 Cam02g1980 Cam-Chr2:32907768 6.10E-157 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1979 K00430 - csv:101204245 580.482