Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g1980 ATGGCGATTACTATTGTTTCTTCTCATAACAAAATAGCAATGACATTCACATTAGCTTTATTGGCAATATTCATGGAGAGCTCCTCAGCTCAGTTGTCCCCCAACTTCTACTACAAGAGTTGTCCTAAGCTCCTTGGTATAGTTCGAGCTGGTGTTCGATCTGCCGTTGCTAAGGAAGCTCGCATGGGCGCTTCTCTTCTCCGGCTCCACTTTCACGATTGTTTCGTTAATGGTTGCGATGGATCCATCCTTCTAGATGATACTCCTACATTTATAGGAGAGCAAACTGCAGCTCCTAACAATAGATCTGTTAGAGGGTTCAACGTGATTGAGAGTATAAAGAAAAATATAGAAAAAAATTGTCCTGGCGTTGTCTCTTGTGCTGATATTTTGACTCTTTCTGCTCGCGACTCCGTTGTAGCATTGGGAGGGCCAAGTTGGAAAGTGAAATTGGGAAGAAGAGATTCCAAAACAGCCCGTTTCTCTGATGTCATTGGTGCTATTCCTCCACCAACCTCCACTCTTGCCACCCTTATCAATCGATTCAATACCAAAGGCCTTTCCCGAAAGGATTTGGTTGCTTTATCTGGGGCTCATACAATTGGGAAAGCAAGGTGTCTGTTTTTCAAGAACCGCATTTATAATGAAACCAACATCGACAAGTCGTTCGCTAAGGAGAGGCGAAGGAACTGCCCAAAGAATGGAGGAGATGACAATCTTACGCCTTTGGACTTTAGAACCCCAAAGCTTTTTGACAACTATTACTACAAGAACCTTTTGGAGAAAAAGGCTTTGCTCCGCTCCGATCAGGTGCTACACGATGGCGGATCCACTGATTCTTTGGTTGAACTCTATAGTCACGACAATGCTGCCTTTGAATCTGACTTCGTGACAGCTATGATCAAGATGGGTGACATTCAGCCGCTCACTGGATCGCGAGGCGAGATCCGAAAAGTCTGCAGTCGACCCAACTAA 975 44.62 MAITIVSSHNKIAMTFTLALLAIFMESSSAQLSPNFYYKSCPKLLGIVRAGVRSAVAKEARMGASLLRLHFHDCFVNGCDGSILLDDTPTFIGEQTAAPNNRSVRGFNVIESIKKNIEKNCPGVVSCADILTLSARDSVVALGGPSWKVKLGRRDSKTARFSDVIGAIPPPTSTLATLINRFNTKGLSRKDLVALSGAHTIGKARCLFFKNRIYNETNIDKSFAKERRRNCPKNGGDDNLTPLDFRTPKLFDNYYYKNLLEKKALLRSDQVLHDGGSTDSLVELYSHDNAAFESDFVTAMIKMGDIQPLTGSRGEIRKVCSRPN 324
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 32907768 32909181 - CaPI482276_02g019800.1 Cam02g1980 121722
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam02g1980 324 FunFam Peroxidase 35 176 - -
Cam02g1980 324 Gene3D - 35 321 - -
Cam02g1980 324 FunFam Peroxidase 169 303 - -
Cam02g1980 324 ProSiteProfiles Plant heme peroxidase family profile. 31 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1980 324 CDD secretory_peroxidase 31 322 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cam02g1980 324 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
Cam02g1980 324 Gene3D Peroxidase, domain 2 169 303 - -
Cam02g1980 324 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1980 324 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1980 324 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1980 324 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1980 324 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1980 324 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1980 324 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1980 324 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1980 324 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1980 324 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601(InterPro)
Cam02g1980 324 Pfam Peroxidase 48 287 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1980 324 SUPERFAMILY Heme-dependent peroxidases 31 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1980 324 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1980 324 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1980 324 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1980 324 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1980 324 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam02g1980 324 PANTHER PEROXIDASE 72-RELATED 20 322 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1978 Cam-Chr2:32895995 Cam02g1980 Cam-Chr2:32907768 1.50E-131 dispersed
Cam02g1980 Cam-Chr2:32907768 Cam11g0604 Cam-Chr11:7585411 1.10E-108 dispersed
Cam02g1979 Cam-Chr2:32902987 Cam02g1980 Cam-Chr2:32907768 6.10E-157 tandem
Cam02g1980 Cam-Chr2:32907768 Cam02g1981 Cam-Chr2:32912262 7.50E-155 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g1980 K00430 - csv:101208108 563.918