Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam02g1987 | ATGGTTATGGAGTTTTTGTTCTCTAGTAATTCTGTAGAGGATCCTAGTGGCTGCCCAACCTTTGGCCATCGGAGACTGCCGGAGCATGTGGCGGCCGCGATGTCTAAACCGCCATTGCTCCCCCCCTTGTCTCCACCTCTTTACTCTCCTTCTTCCTTCTTCATTATCCCCCCTGGTATCAGCCCCACCCAATTTCTTCACTCCCCTCTCCTCCTCAACTCTCCTCATATTCTGCCATCGCCGTCTACCGGAGCAATATCCGCCGGAGATTTGACCGGAACCAGTAACAATTCCGGCCACCATCAACAGAACATCAAACAAGAACACAACAACTTTACTGAACTCTCATTTCCTCGTACTCATCATACCACAAGATCTTCATCATCATCAATGTTTCAACCCTCTTCAACAGTGCAAAGTCAGCGATGGGGTTGTGAAGCCGCCATGAACGGCGGCTCCGAAGCGGAGCAGCGGGCAGAATGGGAGTTGAGAAAACGAGGAACTGAGGATGGGTTTAATTGGAGAAAATATGGGCAAAAAGTAGTAAAAGGAAGTGAAAATCCGAGAAGCTATTACAAATGTACATACCCAAATTGCCCTGTAAGAAAGCAAGTTGAAAGATCATTGAATGGTCAAATTACTGAAATTGTTTACAAAAGTAAACATAACCATCCTAAACCAGACTTCACAAGAAGGTCATCATCGTCTTTTTCTTCTTCTTCTTCATTGTTATCAGAAGCTTTACCTGCAGCTATGGCGGCAGAGCCAAAGAATTCAATTGCCTCTGATTCCCTCACCACGCCGGAGAATTCTTCAATCACGATTGGGGATGATGATGATGATTCCCACGAAGCTGATGCAAAAAGATGGAAAAGTGAGAGTGAGAAGGAAATTATGTCTCCAGTAGGAGGGAAAACAGTGAGAGAACAAAGGGTTGTAGTTCAAACAATTAGCAATGTGGATAAATTAGATGATGGATATTGGTGGAGAAAATATGGACAGAAAGTGGTCAAGGGAAATTCAAATCCAAGGAGCTATTACAAGTGCACATATGCAGGATGTGGAGTGAGAAAGCACATAGAGAGAGCATCCCACGATATAAGGGCAGTCATCACTACCTACGAAGGAAAGCACAACCACGAAGTTCCGGTAGCCCGTGGCAGCGGCGGCGGTAGACCGATACTTATTAGTAGTGAAGGAAGTAATAATGATGTTGCATCGAACGGCGGTGGCAACCGACGACCGAGTTCAGAGATCTGTAGTGGTAATAATGGATTGTGGGAGTTGACAAACATGGTGTGGAGGAGCAAAGAAGAAGCCGTGGATGACATATTTATGGGTTGTTATTAG | 1350 | 45.26 | MVMEFLFSSNSVEDPSGCPTFGHRRLPEHVAAAMSKPPLLPPLSPPLYSPSSFFIIPPGISPTQFLHSPLLLNSPHILPSPSTGAISAGDLTGTSNNSGHHQQNIKQEHNNFTELSFPRTHHTTRSSSSSMFQPSSTVQSQRWGCEAAMNGGSEAEQRAEWELRKRGTEDGFNWRKYGQKVVKGSENPRSYYKCTYPNCPVRKQVERSLNGQITEIVYKSKHNHPKPDFTRRSSSSFSSSSSLLSEALPAAMAAEPKNSIASDSLTTPENSSITIGDDDDDSHEADAKRWKSESEKEIMSPVGGKTVREQRVVVQTISNVDKLDDGYWWRKYGQKVVKGNSNPRSYYKCTYAGCGVRKHIERASHDIRAVITTYEGKHNHEVPVARGSGGGRPILISSEGSNNDVASNGGGNRRPSSEICSGNNGLWELTNMVWRSKEEAVDDIFMGCY | 449 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 32947815 | 32952532 | + | CaPI482276_02g019870.1 | Cam02g1987 | 121729 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam02g1987 | 449 | FunFam | WRKY transcription factor 57 | 309 | 383 | - | - | |
| Cam02g1987 | 449 | MobiDBLite | consensus disorder prediction | 217 | 239 | - | - | |
| Cam02g1987 | 449 | MobiDBLite | consensus disorder prediction | 381 | 417 | - | - | |
| Cam02g1987 | 449 | SUPERFAMILY | WRKY DNA-binding domain | 315 | 383 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam02g1987 | 449 | Gene3D | WRKY domain | 155 | 228 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam02g1987 | 449 | Gene3D | WRKY domain | 308 | 384 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam02g1987 | 449 | Pfam | WRKY DNA -binding domain | 169 | 225 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam02g1987 | 449 | Pfam | WRKY DNA -binding domain | 324 | 381 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam02g1987 | 449 | ProSiteProfiles | WRKY domain profile. | 169 | 227 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam02g1987 | 449 | ProSiteProfiles | WRKY domain profile. | 318 | 383 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam02g1987 | 449 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 104 | 388 | IPR044810 | GO:0003700(InterPro) | |
| Cam02g1987 | 449 | MobiDBLite | consensus disorder prediction | 83 | 103 | - | - | |
| Cam02g1987 | 449 | MobiDBLite | consensus disorder prediction | 258 | 304 | - | - | |
| Cam02g1987 | 449 | MobiDBLite | consensus disorder prediction | 119 | 143 | - | - | |
| Cam02g1987 | 449 | FunFam | WRKY transcription factor | 156 | 228 | - | - | |
| Cam02g1987 | 449 | SUPERFAMILY | WRKY DNA-binding domain | 168 | 227 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam02g1987 | 449 | SMART | WRKY_cls | 323 | 382 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam02g1987 | 449 | SMART | WRKY_cls | 168 | 226 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam02g1987 | 449 | MobiDBLite | consensus disorder prediction | 395 | 417 | - | - | |
| Cam02g1987 | 449 | MobiDBLite | consensus disorder prediction | 276 | 298 | - | - | |
| Cam02g1987 | 449 | MobiDBLite | consensus disorder prediction | 259 | 273 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam02g1987 | Cam-Chr2:32947815 | Cam03g0015 | Cam-Chr3:1142483 | 3.20E-79 | dispersed | |
| Cam02g1987 | Cam-Chr2:32947815 | Cam05g2592 | Cam-Chr5:33567905 | 3.00E-61 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 51560 | PF03106 | WRKY | 1.50E-22 | CL0274 | Cam | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam02g1987 | K13424 | - | mdm:103447297 | 357.451 |