Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2000 ATGGGAGCCGGTTCATCTCCTTGCGCCTCTTGCAAATTGCTACGGCGGCGCTGCGCAAAAGACTGCATTTTTGCGCCTTATTTCCCTTCCGATGACCCTTTCAAATTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAATGTCAGCAAAATGTTGCAGGAAGTTCCAGTAGAACAGAGAGCAGATGCAGTGAGCAGTATGGTATATGAAGCGAGTGCAAGAATGCGGGATCCAGTGTATGGTTGTGTAGGGACAATCTCGTTTCTACAAAATGAAGTTTCTCGATTGGAAATGCAACTCGGAGCAGCACAAGCAGAAATTTTGACTTTGCATATGCAGCAACAAGCAACTCCAACAACATTTCCGACAACGACGACCCACACGGATCAAGATGATCAAAATCTTGTTATTTTCTCAAATGCTGATTCTTCTAATTCCTTCCATATTTTCCAGGAAGAGGGGGACTATTACCCTCTATGGACTTGA 486 45.06 MGAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQRADAVSSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQATPTTFPTTTTHTDQDDQNLVIFSNADSSNSFHIFQEEGDYYPLWT 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33053154 33053986 + CaPI482276_02g020000.1 Cam02g2000 121742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2000 161 Coils Coil 86 106 - -
Cam02g2000 161 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 126 - -
Cam02g2000 161 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Cam02g2000 161 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2000 Cam-Chr2:33053154 Cam09g2292 Cam-Chr9:37390670 2.90E-38 dispersed
Cam02g2000 Cam-Chr2:33053154 Cam07g0466 Cam-Chr7:6456415 1.20E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51561 PF03195 LOB 2.10E-40 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2000 - - - 0.0