Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2020 ATGAAGACCGAAGAAGACAAGAAAGAAAATATAATTAAAAAAGGAAAAAGAAAAAGTTTGAAGAGGACGGTGGCGGAGACCAAAGAGCTTTGGCTGATGCATAGAACCCTGTTTCAGCTTCTCTTTCGATCTGTCGATTCCCGCTCTCTCATCCGTTTTCTTTCTTACAAGAAATTTGAAGGTCTTAAGACGGCTACAGATGATCTGATTGGATTTAGGAGTGCTGTTGAGGAAGGTGGTTATAATATTGATGAGGCAAGCTTGTGGTATGGGAGGATTTTCGGTTCAAAAAAGATGGGGTATGAAGAAAGGACTCCTCTTATGGTTGCAGCCATGTTTGGGAGTATGAATGTTCTGTCTTATATCCTTCACAGTGGTCGTGTTGATGTTAATCGAGCTTGTGGTTCAGATGGCGCAACGACTCTCCATTGTGCTGTTGCTGGTGGTTCTGCTGTTGCGGATCAGGTTGTCAAACTCTTGATTGATGCTTCCGCTGATGTGAGTGCTGTTGATGCAAACGGTAACCGGCCTGGTGATTTGATTGCTCCTGATTTTACTTCAGCCTCCTATTCAAGGAAAAAAGTGTTACAACAATTACTAAATGGTCGTGAAGAAGCCCTTGGTTCATCCGAGTCAATATTTTACGAGAGAGAAACACAGGAGCCATTGGAGCTATCACCCCCTCGGGCTTCAAGAGATGGGACAGAGAAGAAAGAGTATCCGGTTGATCTCTCACTTCCAGACATCAAGAACGGAATCTATAGCACAGATGAGTTTAGAATGTATACTTTTAAGATCAAACCTTGTACAAGAGCTTACTCTCATGATTGGACAGAGTGTCCATTTGTTCACCCTGGGGAAAATGCAAGGAGGCGGGATCCTAGGAAATACCATTACAGCTGCGTCCCATGTCCAGAATTCAGAAAAGGAACATGTAGGCAGGGGGATGCCTGTGAATATGCTCATGGAATTTTTGAATGTTGGCTCCATCCTGCTCAATATCGTACCCGTCTTTGCAAAGATGAAACTGGATGCACCCGAAAAGTCTGTTTCTTTGCTCACAAGCCGGAAGAACTCCGCCCCTTGTATGCTTCAACTGGTTCTGCTGTACTGTCTCCAAGATCAATCTGTGGTTCTTCACTCGACATTGCGTCGATCAGCCCACTTACCCTTGGTTCTCCTTCAGCTCTGATACCTCCTTCATCAACTCCACCTTTAACCCCTTCTGGAGTTTCCTCTCCAATGGGTGGAACCATGTGGCAGACTCAATGTAATATGGCGCCCCCGACCTTGCAGCTTCCAGGTAGCAGGCTAAAGGCTTCTTTGAGCGCAAGAGACATAGATATAGATGTTGAGTTACTCGGTCTCGAAAGTCAGCGCCGTAGACAACAACAGCTAATGGATGAGATGTCCTGTCTACCTTCCCCTACCAGATGGAACAATGGCTTGCCAACCCCTCCATCTTTTCCATCCCCGAGGAGTAGAAATGAAGAACTTAATGGACTTGGAGGCATGAACCCTAATAACCTCGAGGACCTTTTCGGGTCTGTAGATCCTGCGATTTTGCCTCAATTACAAGGACTTTCATTGGATTCTGTGGGATCTCAGGTACAATCCCCTTCTGGGATTCAGATGCGCCAAAGCTTGAATCAGTCTTTCCTCTCGAGCTATGCTAACAGCATTGGATCTCCTCCTGCAAGATCATCTCAACCATCCGTGTCTACTGCAGCTAGCGTTCTGAGTTCTAGGGCTGCTGCTTTTGCCAAGCGTAGCCAGAGCTTTATCGAGCGTAGCGTAGTGAACCGTCATTCTGGACTTTCACCCCCAGCTACATCCACAACTGCCATGCCTTTGAGCCTGTCTGATTGGGGTTCGCCGGATGGAAAACTAGACTGGGGAATTCGTGGAGAAGAACTCAACAAGTTAAGGAAGTCTGCATCATTTGGGTTCCGAAACAGTTGCACCAGCACTCTTGCCACGTCCACACTGCACGCTGCCACTCTCGAGCCAGACGTGTCGTGGGTTCAGTCCCTGGTGAAGGATGGTCCATCCGAAAATGCTGTGCAGCTGAGTATGGACGAGCAGCAGCAACAGCAGCTTTGTCATCTCGACAATGGCGATTCAAAGCGAAGGTAG 2136 47.0 MKTEEDKKENIIKKGKRKSLKRTVAETKELWLMHRTLFQLLFRSVDSRSLIRFLSYKKFEGLKTATDDLIGFRSAVEEGGYNIDEASLWYGRIFGSKKMGYEERTPLMVAAMFGSMNVLSYILHSGRVDVNRACGSDGATTLHCAVAGGSAVADQVVKLLIDASADVSAVDANGNRPGDLIAPDFTSASYSRKKVLQQLLNGREEALGSSESIFYERETQEPLELSPPRASRDGTEKKEYPVDLSLPDIKNGIYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGTCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPLYASTGSAVLSPRSICGSSLDIASISPLTLGSPSALIPPSSTPPLTPSGVSSPMGGTMWQTQCNMAPPTLQLPGSRLKASLSARDIDIDVELLGLESQRRRQQQLMDEMSCLPSPTRWNNGLPTPPSFPSPRSRNEELNGLGGMNPNNLEDLFGSVDPAILPQLQGLSLDSVGSQVQSPSGIQMRQSLNQSFLSSYANSIGSPPARSSQPSVSTAASVLSSRAAAFAKRSQSFIERSVVNRHSGLSPPATSTTAMPLSLSDWGSPDGKLDWGIRGEELNKLRKSASFGFRNSCTSTLATSTLHAATLEPDVSWVQSLVKDGPSENAVQLSMDEQQQQQLCHLDNGDSKRR 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33213292 33216359 - CaPI482276_02g020200.1 Cam02g2020 121762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2020 711 Gene3D - 81 203 IPR036770 -
Cam02g2020 711 FunFam Zinc finger CCCH domain-containing protein 66 256 324 - -
Cam02g2020 711 SMART c3hfinal6 333 356 IPR000571 GO:0046872(InterPro)
Cam02g2020 711 SMART c3hfinal6 298 324 IPR000571 GO:0046872(InterPro)
Cam02g2020 711 SUPERFAMILY Ankyrin repeat 100 177 IPR036770 -
Cam02g2020 711 MobiDBLite consensus disorder prediction 685 703 - -
Cam02g2020 711 Pfam Ankyrin repeats (3 copies) 102 170 IPR002110 GO:0005515(InterPro)
Cam02g2020 711 ProSiteProfiles Ankyrin repeat profile. 137 172 IPR002110 GO:0005515(InterPro)
Cam02g2020 711 Gene3D - 299 361 - -
Cam02g2020 711 MobiDBLite consensus disorder prediction 218 239 - -
Cam02g2020 711 MobiDBLite consensus disorder prediction 474 494 - -
Cam02g2020 711 MobiDBLite consensus disorder prediction 685 711 - -
Cam02g2020 711 ProSiteProfiles Ankyrin repeat region circular profile. 137 171 - -
Cam02g2020 711 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 323 IPR000571 GO:0046872(InterPro)
Cam02g2020 711 ProSiteProfiles Zinc finger C3H1-type profile. 303 325 IPR000571 GO:0046872(InterPro)
Cam02g2020 711 PANTHER UNKEMPT FAMILY MEMBER 99 681 IPR045234 -
Cam02g2020 711 SMART ANK_2a 137 169 IPR002110 GO:0005515(InterPro)
Cam02g2020 711 SMART ANK_2a 102 132 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2020 Cam-Chr2:33213292 Cam10g1676 Cam-Chr10:30768265 1.60E-133 dispersed
Cam10g1442 Cam-Chr10:28090514 Cam02g2020 Cam-Chr2:33213292 9.30E-129 transposed
Cam02g2020 Cam-Chr2:33213292 Cam07g0436 Cam-Chr7:6015143 2.50E-203 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51565 PF12796 Ank_2 2.10E-06 CL0465 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2020 - - - 0.0