Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2077 ATGGCCACCACCATTTCTCTCTGCATTGCTTCTCTTCTCTCATTTTCCCTCCTTGTCCAAGCCAGAATTCCCGGAGTTTACTCCGGCGGCCCATGGCAGAGCGCCCACGCCACTTTCTACGGTGGCGCCGACGCTTCCGGCACCATGGGTGGAGCTTGTGGGTACGGGAATTTGTACAGCCAAGGTTATGGCGTGAACACGGCGGCCCTGAGTACCGCATTGTTCAATAAGGGTCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGCGCTAATGACCCTAGATGGTGCCATTCTGGTAGTCCCTCCATCTTGGTTACTGCTACCAATTTCTGCCCGCCCAACTATGCTCTTCCTAACGATAATGGAGGCTGGTGTAACCCTCCCCGGACTCACTTCGATCTTGCCATGCCTATGTTCCTTAAAATCGCTGAGTACCGCGCCGGAATCGTCCCCGTCTCTTACCGCCGTGTACCATGCCGGAAGCAAGGAGGAATCAGGTTCACGATCAACGGGTTCCGTTACTTCAATTTGGTTCTAATCACCAACGTGGCAGGTGCAGGGGATATCGTGAGGGTTAGCGTCAAAGGAACAAGAACCGGGTGGATGAGCTTAACAAGAAACTGGGGGCAAAATTGGCAATCCAATGCCGTCTTAGTGGGCCAGGCTCTTTCTTTTAGAGTTACCGGCAGTGACCGACGAACCTCAACGTCATGGAACATAGTCCCCGCTCATTGGCAGTTCGGCCAAACTTTCACCGGCAAGAACTTCCGTGTTTAA 777 53.15 MATTISLCIASLLSFSLLVQARIPGVYSGGPWQSAHATFYGGADASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILVTATNFCPPNYALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTRTGWMSLTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPAHWQFGQTFTGKNFRV 258
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 33675434 33677159 + CaPI482276_02g020770.1 Cam02g2077 121819
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2077 258 PANTHER EXPANSIN-A15 10 256 IPR002963 GO:0009664(InterPro)
Cam02g2077 258 CDD DPBB_EXPA_N 31 159 - -
Cam02g2077 258 Gene3D - 164 256 IPR036749 -
Cam02g2077 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Cam02g2077 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Cam02g2077 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
Cam02g2077 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Cam02g2077 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
Cam02g2077 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Cam02g2077 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Cam02g2077 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Cam02g2077 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664(InterPro)
Cam02g2077 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Cam02g2077 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Cam02g2077 258 Gene3D - 20 160 IPR036908 -
Cam02g2077 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Cam02g2077 258 FunFam Expansin 21 160 - -
Cam02g2077 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
Cam02g2077 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Cam02g2077 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Cam02g2077 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
Cam02g2077 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
Cam02g2077 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Cam02g2077 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Cam02g2077 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Cam02g2077 258 FunFam Expansin 164 256 - -
Cam02g2077 258 SMART dpbb_1 67 154 IPR007112 -
Cam02g2077 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0866 Cam-Chr1:10047756 Cam02g2077 Cam-Chr2:33675434 1.90E-74 dispersed
Cam02g0338 Cam-Chr2:4137936 Cam02g2077 Cam-Chr2:33675434 2.30E-73 dispersed
Cam02g2077 Cam-Chr2:33675434 Cam05g2614 Cam-Chr5:33721645 6.90E-103 dispersed
Cam02g2077 Cam-Chr2:33675434 Cam03g0142 Cam-Chr3:2342561 1.10E-137 wgd
Cam02g2077 Cam-Chr2:33675434 Cam04g0911 Cam-Chr4:23247577 2.50E-137 wgd
Cam02g2077 Cam-Chr2:33675434 Cam07g0331 Cam-Chr7:4460313 2.40E-135 wgd
Cam02g2077 Cam-Chr2:33675434 Cam09g2011 Cam-Chr9:34743180 4.20E-124 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2077 - - - 0.0