Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2095 ATGGAGGAGGATAACAATGGCGGCTCCTTTCGGAGTTTGATTGACTTGGTGAACGATGTAGCTTCAATCTCAGACTACAGGTACGCGGTCAGAAAGCAGTATTGTAATTTAGCAAGACGACTGAAGCTGTTGATCCCATTGTTTGAGGAGATGAGGGATATGAAGCAGCCGCTGCCGGGTCATACCGTGAAAGCTATTGCTTCGTTGAAGGAAGCTCTGGAATCGACCAAGGAGTTGCTTAAACATGGGAGCGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGCAAATTTTGAATCAATTTCACGAGGTGACAGCAAGACTAGAGCAATCTCTGAATGACATTTCACATGAAGATCTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCTAGAGGAAGGAATGATACACAAGATGCCGAGCTGTATGTCAACCTCAACTCTCTCTATAACAACAGCAGAGACTCTGTTGATCCTTCTGTCTTGAAAGGACTGGCTGAGAAGTTGCAGCTGATTGATATAGCTGATCTTACTCAAGAGTCTCTTGATTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATATTATTGAAGAAAATAAAAGATTTTATGCTAACTGAAAACCCTGAAATTGGTCTTTCTTCAAAAGAACAAAGTCATCCTCGCACTGGTGGAAAAGTGTCTGCTGGTAAGAAAGATATAGCGTCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTGGATTTGATGAAAGATCCTGTCATTGTCTCCACAGGACAGACCTATGAACGTGCTTTCATTGAGAAGTGGCTGGCAGATGGACACTCAACATGCCCAAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGTGAGGTCAATGGAATTGAACCACCACAACGTTCCGGCAGTTCTCAGCCCAGTGAGTCGATGACTCAGGCCGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGGTAACATTGAAGACAGACGAGCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTGGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGATCTCCTTTCAACAACAGACCCCCTCACTCAAGAACATGCTGTGACAGCATTGCTTAACCTTTCAATTTGTGACAATAATAAGAGAAGCATCATGTCCTGTAGGGCAGCGCCTGCCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCCACTCTTTTCAGTCTCTCTGTTGTAGACGAATATAAAATAATGATCGGCGCATCGGGAGCCATTCTGCCACTTATTGCACTACTCAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACCGCTCTTTTCAACTTGTGTTTCTTCCAAGGGAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTTCCATTCTGATGCAGCTGTTGACGGAATCTAGAATAGGGATGGTAGATGAGGCCCTAGCAATATTAGCCATACTGGCTAGCAATTCTGAAGGGCGAGCTGCGATTGGAGCAGCCAAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAACAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCATGGGAGACAAACGACATCTTGTGGAAGCGAAGGAGCTCGGAGTGATTGGTTTGCTTATGGATTTGGCAGAAAATGGCACAGACCGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAACAGGTTTACAGAGCTGCAGAAAGAGGCTGAGGTTCAGTCTCAGTCTCAAACACAACTGTTATTACCACAACCTTCCGCAATTGGCAACTTCGAAAGCTGA 1980 44.95 MEEDNNGGSFRSLIDLVNDVASISDYRYAVRKQYCNLARRLKLLIPLFEEMRDMKQPLPGHTVKAIASLKEALESTKELLKHGSEGSKIYLALEREQILNQFHEVTARLEQSLNDISHEDLDISDEVKEQVELVLSQFKRARGRNDTQDAELYVNLNSLYNNSRDSVDPSVLKGLAEKLQLIDIADLTQESLDLHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGLSSKEQSHPRTGGKVSAGKKDIASLHIPEDFRCPISLDLMKDPVIVSTGQTYERAFIEKWLADGHSTCPKTQQVLTSKILTPNYVLRSLIAQWCEVNGIEPPQRSGSSQPSESMTQAERSKYEALLHKLTSGNIEDRRAAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPAIVHVLKWGSMEARENAAATLFSLSVVDEYKIMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAKSVPILVNLIGTGSPRNRENAAAVLVHLCMGDKRHLVEAKELGVIGLLMDLAENGTDRGKRKATQLLDQINRFTELQKEAEVQSQSQTQLLLPQPSAIGNFES 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33809438 33813081 + CaPI482276_02g020950.1 Cam02g2095 121837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2095 659 FunFam RING-type E3 ubiquitin transferase 337 632 - -
Cam02g2095 659 CDD MLKL_NTD 31 139 - -
Cam02g2095 659 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam02g2095 659 SMART arm_5 423 463 IPR000225 GO:0005515(InterPro)
Cam02g2095 659 SMART arm_5 505 545 IPR000225 GO:0005515(InterPro)
Cam02g2095 659 SMART arm_5 464 504 IPR000225 GO:0005515(InterPro)
Cam02g2095 659 SMART arm_5 546 586 IPR000225 GO:0005515(InterPro)
Cam02g2095 659 SMART arm_5 382 422 IPR000225 GO:0005515(InterPro)
Cam02g2095 659 Gene3D - 530 648 IPR011989 -
Cam02g2095 659 Gene3D - 338 529 IPR011989 -
Cam02g2095 659 PANTHER U BOX DOMAIN-CONTAINING 30 627 - -
Cam02g2095 659 SMART Ubox_2 261 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam02g2095 659 SUPERFAMILY ARM repeat 354 626 IPR016024 -
Cam02g2095 659 SUPERFAMILY RING/U-box 252 332 - -
Cam02g2095 659 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515(InterPro)
Cam02g2095 659 Pfam Armadillo/beta-catenin-like repeat 546 585 IPR000225 GO:0005515(InterPro)
Cam02g2095 659 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515(InterPro)
Cam02g2095 659 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 431 IPR000225 GO:0005515(InterPro)
Cam02g2095 659 Pfam Mixed lineage kinase domain-like N-terminal domain 29 151 IPR054000 -
Cam02g2095 659 FunFam RING-type E3 ubiquitin transferase 7 119 - -
Cam02g2095 659 Pfam U-box domain 258 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam02g2095 659 FunFam RING-type E3 ubiquitin transferase 257 331 - -
Cam02g2095 659 CDD RING-Ubox_PUB 259 311 IPR045210 -
Cam02g2095 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 331 IPR013083 -
Cam02g2095 659 Gene3D - 9 119 IPR036537 GO:0007166(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1769 Cam-Chr1:31277441 Cam02g2095 Cam-Chr2:33809438 5.90E-20 dispersed
Cam02g2095 Cam-Chr2:33809438 Cam07g0630 Cam-Chr7:11647810 1.70E-60 dispersed
Cam01g2197 Cam-Chr1:34547856 Cam02g2095 Cam-Chr2:33809438 2.20E-14 transposed
Cam02g1021 Cam-Chr2:15556894 Cam02g2095 Cam-Chr2:33809438 1.60E-87 transposed
Cam05g2319 Cam-Chr5:31267579 Cam02g2095 Cam-Chr2:33809438 2.10E-121 transposed
Cam07g0206 Cam-Chr7:3220050 Cam02g2095 Cam-Chr2:33809438 5.50E-37 transposed
Cam07g0873 Cam-Chr7:21720775 Cam02g2095 Cam-Chr2:33809438 5.70E-25 transposed
Cam02g2095 Cam-Chr2:33809438 Cam03g0158 Cam-Chr3:2460309 4.00E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2095 K27628 - csv:101221150 1140.56