Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam02g2095 | ATGGAGGAGGATAACAATGGCGGCTCCTTTCGGAGTTTGATTGACTTGGTGAACGATGTAGCTTCAATCTCAGACTACAGGTACGCGGTCAGAAAGCAGTATTGTAATTTAGCAAGACGACTGAAGCTGTTGATCCCATTGTTTGAGGAGATGAGGGATATGAAGCAGCCGCTGCCGGGTCATACCGTGAAAGCTATTGCTTCGTTGAAGGAAGCTCTGGAATCGACCAAGGAGTTGCTTAAACATGGGAGCGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGCAAATTTTGAATCAATTTCACGAGGTGACAGCAAGACTAGAGCAATCTCTGAATGACATTTCACATGAAGATCTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCTAGAGGAAGGAATGATACACAAGATGCCGAGCTGTATGTCAACCTCAACTCTCTCTATAACAACAGCAGAGACTCTGTTGATCCTTCTGTCTTGAAAGGACTGGCTGAGAAGTTGCAGCTGATTGATATAGCTGATCTTACTCAAGAGTCTCTTGATTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATATTATTGAAGAAAATAAAAGATTTTATGCTAACTGAAAACCCTGAAATTGGTCTTTCTTCAAAAGAACAAAGTCATCCTCGCACTGGTGGAAAAGTGTCTGCTGGTAAGAAAGATATAGCGTCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTGGATTTGATGAAAGATCCTGTCATTGTCTCCACAGGACAGACCTATGAACGTGCTTTCATTGAGAAGTGGCTGGCAGATGGACACTCAACATGCCCAAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGTGAGGTCAATGGAATTGAACCACCACAACGTTCCGGCAGTTCTCAGCCCAGTGAGTCGATGACTCAGGCCGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGGTAACATTGAAGACAGACGAGCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTGGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGATCTCCTTTCAACAACAGACCCCCTCACTCAAGAACATGCTGTGACAGCATTGCTTAACCTTTCAATTTGTGACAATAATAAGAGAAGCATCATGTCCTGTAGGGCAGCGCCTGCCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCCACTCTTTTCAGTCTCTCTGTTGTAGACGAATATAAAATAATGATCGGCGCATCGGGAGCCATTCTGCCACTTATTGCACTACTCAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACCGCTCTTTTCAACTTGTGTTTCTTCCAAGGGAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTTCCATTCTGATGCAGCTGTTGACGGAATCTAGAATAGGGATGGTAGATGAGGCCCTAGCAATATTAGCCATACTGGCTAGCAATTCTGAAGGGCGAGCTGCGATTGGAGCAGCCAAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAACAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCATGGGAGACAAACGACATCTTGTGGAAGCGAAGGAGCTCGGAGTGATTGGTTTGCTTATGGATTTGGCAGAAAATGGCACAGACCGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAACAGGTTTACAGAGCTGCAGAAAGAGGCTGAGGTTCAGTCTCAGTCTCAAACACAACTGTTATTACCACAACCTTCCGCAATTGGCAACTTCGAAAGCTGA | 1980 | 44.95 | MEEDNNGGSFRSLIDLVNDVASISDYRYAVRKQYCNLARRLKLLIPLFEEMRDMKQPLPGHTVKAIASLKEALESTKELLKHGSEGSKIYLALEREQILNQFHEVTARLEQSLNDISHEDLDISDEVKEQVELVLSQFKRARGRNDTQDAELYVNLNSLYNNSRDSVDPSVLKGLAEKLQLIDIADLTQESLDLHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGLSSKEQSHPRTGGKVSAGKKDIASLHIPEDFRCPISLDLMKDPVIVSTGQTYERAFIEKWLADGHSTCPKTQQVLTSKILTPNYVLRSLIAQWCEVNGIEPPQRSGSSQPSESMTQAERSKYEALLHKLTSGNIEDRRAAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPAIVHVLKWGSMEARENAAATLFSLSVVDEYKIMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAKSVPILVNLIGTGSPRNRENAAAVLVHLCMGDKRHLVEAKELGVIGLLMDLAENGTDRGKRKATQLLDQINRFTELQKEAEVQSQSQTQLLLPQPSAIGNFES | 659 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 33809438 | 33813081 | + | CaPI482276_02g020950.1 | Cam02g2095 | 121837 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam02g2095 | 659 | FunFam | RING-type E3 ubiquitin transferase | 337 | 632 | - | - | |
Cam02g2095 | 659 | CDD | MLKL_NTD | 31 | 139 | - | - | |
Cam02g2095 | 659 | ProSiteProfiles | U-box domain profile. | 257 | 331 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cam02g2095 | 659 | SMART | arm_5 | 423 | 463 | IPR000225 | GO:0005515(InterPro) | |
Cam02g2095 | 659 | SMART | arm_5 | 505 | 545 | IPR000225 | GO:0005515(InterPro) | |
Cam02g2095 | 659 | SMART | arm_5 | 464 | 504 | IPR000225 | GO:0005515(InterPro) | |
Cam02g2095 | 659 | SMART | arm_5 | 546 | 586 | IPR000225 | GO:0005515(InterPro) | |
Cam02g2095 | 659 | SMART | arm_5 | 382 | 422 | IPR000225 | GO:0005515(InterPro) | |
Cam02g2095 | 659 | Gene3D | - | 530 | 648 | IPR011989 | - | |
Cam02g2095 | 659 | Gene3D | - | 338 | 529 | IPR011989 | - | |
Cam02g2095 | 659 | PANTHER | U BOX DOMAIN-CONTAINING | 30 | 627 | - | - | |
Cam02g2095 | 659 | SMART | Ubox_2 | 261 | 324 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cam02g2095 | 659 | SUPERFAMILY | ARM repeat | 354 | 626 | IPR016024 | - | |
Cam02g2095 | 659 | SUPERFAMILY | RING/U-box | 252 | 332 | - | - | |
Cam02g2095 | 659 | Pfam | Armadillo/beta-catenin-like repeat | 382 | 421 | IPR000225 | GO:0005515(InterPro) | |
Cam02g2095 | 659 | Pfam | Armadillo/beta-catenin-like repeat | 546 | 585 | IPR000225 | GO:0005515(InterPro) | |
Cam02g2095 | 659 | Pfam | Armadillo/beta-catenin-like repeat | 465 | 503 | IPR000225 | GO:0005515(InterPro) | |
Cam02g2095 | 659 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 393 | 431 | IPR000225 | GO:0005515(InterPro) | |
Cam02g2095 | 659 | Pfam | Mixed lineage kinase domain-like N-terminal domain | 29 | 151 | IPR054000 | - | |
Cam02g2095 | 659 | FunFam | RING-type E3 ubiquitin transferase | 7 | 119 | - | - | |
Cam02g2095 | 659 | Pfam | U-box domain | 258 | 328 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cam02g2095 | 659 | FunFam | RING-type E3 ubiquitin transferase | 257 | 331 | - | - | |
Cam02g2095 | 659 | CDD | RING-Ubox_PUB | 259 | 311 | IPR045210 | - | |
Cam02g2095 | 659 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 255 | 331 | IPR013083 | - | |
Cam02g2095 | 659 | Gene3D | - | 9 | 119 | IPR036537 | GO:0007166(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g1769 | Cam-Chr1:31277441 | Cam02g2095 | Cam-Chr2:33809438 | 5.90E-20 | dispersed | |
Cam02g2095 | Cam-Chr2:33809438 | Cam07g0630 | Cam-Chr7:11647810 | 1.70E-60 | dispersed | |
Cam01g2197 | Cam-Chr1:34547856 | Cam02g2095 | Cam-Chr2:33809438 | 2.20E-14 | transposed | |
Cam02g1021 | Cam-Chr2:15556894 | Cam02g2095 | Cam-Chr2:33809438 | 1.60E-87 | transposed | |
Cam05g2319 | Cam-Chr5:31267579 | Cam02g2095 | Cam-Chr2:33809438 | 2.10E-121 | transposed | |
Cam07g0206 | Cam-Chr7:3220050 | Cam02g2095 | Cam-Chr2:33809438 | 5.50E-37 | transposed | |
Cam07g0873 | Cam-Chr7:21720775 | Cam02g2095 | Cam-Chr2:33809438 | 5.70E-25 | transposed | |
Cam02g2095 | Cam-Chr2:33809438 | Cam03g0158 | Cam-Chr3:2460309 | 4.00E-163 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam02g2095 | K27628 | - | csv:101221150 | 1140.56 |