Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2096 ATGGCTCACTCTTCTCTTCCAATCTTCTTAGATCCTCCAAATTGGCATCAACCGAATCAGTCAGCAGCTGCAGCAACAAATGATGTTCATCAAGACCCACGTCAGCTTCCGGCAGCATTTCTACAACCGCCGCCGCCGCCAATGGCAGGTCATGGAGGAGGCGGAATCCGGCCGGGTTCTATGGCGTATAGAGCCCGGCTGGCGATGATTCCCCAGCCGGAGGCAGCACTAAAATGCCCTCGTTGTGATTCTACAAACACCAAATTTTGCTATTTCAACAATTACAGCCTTTCTCAGCCGCGCCACTTCTGTAAAGCCTGCCGCCGGTACTGGACCCGCGGCGGCGCTCTTAGAAACGTCCCCGTCGGTGGTGGCTTTCGCAAGAACAAGAAGAAGAAGAAATCTAACCCGTCTAAGTCCCCCACTGCCTCTCAATCTCAAATGGGTAATTCAAGATCAATAATGTCAAGAAGCTGCAACAACATGGAGAGCAGTAGTACAATGAGGGATTTCCCATCACATTCTTCTTTGCCTTCATTAAATATCCTTCCATCTCTTCAACAACATTTTTCTCGTAATTTTGGAAACAACTTCCCCGGAATTCACATCAATAATTCCGCAGTCGCCAGAGAATACGACGTCGAATGGCAACAACAACAACCATTCATCGTGGCCGGACTAGAATCTCCGACGACTGCGACAACAACCGCCGCAGCATACACACAAGTTGAAGTCAACAACAACGGCAACAACAACAACTTTGTTGCTAACTCATTACAACAAGCAGCTGGTTTAGTACAATACAATAATAATTGTCATCAACAACTGCAAAATCTGACACCCTTTTCCAGAATTCCTATGAAAAATGAAGAACAAAACCAAGAACAAGGAATATTATTATCAAATTTCTTACGACCAAATGATCACAACAGCCAGTTTTGGGGAAGTAATCATCAAAATTCATGGACGGATCATTTGTCAGCTCTCAGTTCTTCTTCAAGCAGCCATCTTTTGTAA 1017 45.43 MAHSSLPIFLDPPNWHQPNQSAAAATNDVHQDPRQLPAAFLQPPPPPMAGHGGGGIRPGSMAYRARLAMIPQPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGFRKNKKKKKSNPSKSPTASQSQMGNSRSIMSRSCNNMESSSTMRDFPSHSSLPSLNILPSLQQHFSRNFGNNFPGIHINNSAVAREYDVEWQQQQPFIVAGLESPTTATTTAAAYTQVEVNNNGNNNNFVANSLQQAAGLVQYNNNCHQQLQNLTPFSRIPMKNEEQNQEQGILLSNFLRPNDHNSQFWGSNHQNSWTDHLSALSSSSSSHLL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33819555 33821299 - CaPI482276_02g020960.1 Cam02g2096 121838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2096 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 71 263 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2096 338 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam02g2096 338 MobiDBLite consensus disorder prediction 138 174 - -
Cam02g2096 338 MobiDBLite consensus disorder prediction 11 30 - -
Cam02g2096 338 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam02g2096 338 MobiDBLite consensus disorder prediction 14 28 - -
Cam02g2096 338 MobiDBLite consensus disorder prediction 121 174 - -
Cam02g2096 338 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2096 Cam-Chr2:33819555 Cam02g2154 Cam-Chr2:34344491 3.00E-29 dispersed
Cam10g2068 Cam-Chr10:34456661 Cam02g2096 Cam-Chr2:33819555 7.90E-38 wgd
Cam02g2096 Cam-Chr2:33819555 Cam03g0159 Cam-Chr3:2481706 4.60E-38 wgd
Cam02g2096 Cam-Chr2:33819555 Cam03g0250 Cam-Chr3:3606331 5.10E-29 wgd
Cam02g2096 Cam-Chr2:33819555 Cam04g0898 Cam-Chr4:23100913 3.30E-36 wgd
Cam02g2096 Cam-Chr2:33819555 Cam07g0322 Cam-Chr7:4321424 3.10E-42 wgd
Cam02g2096 Cam-Chr2:33819555 Cam09g2036 Cam-Chr9:34913714 1.90E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51570 PF02701 zf-Dof 4.80E-33 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2096 - - - 0.0