Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam02g2140 | ATGGAACCGTTGGATAAACCAGCGCCGAAGTCCTCGCCACTCGCGCCATTTCCTCGGGACTCTCGAGGATCCTTAGAGGTTTTCAATCCCTCGGCCACTTACACGTCCCGACCTCGGGCGAACCCAACGTGGCCCAATTGGGTGGAGCCACGTAGCAGTGCGGAGTCGGACTCAGCCAAACTCGTCGCGAAACCGGTGAGTAAAACCGGCGAGGAAATAACGTCATGGATGGCTTTCAAGGACTCAAACCCTTCCCCACAACCCTCATCCCCACTCGCTCAGAAGACAATATCGGCGATTCTCAGCGACAAATCGCCAACCGGGAAAGCGAAATCGGCGGACGAAGTGGGTTCTGCCGCCCTACGCGCTGCGGAGTGGGGATTAGTACTGAAAACCGATACAGAGACTGGGAAGCCACAAGGCGTTGGAGTTCGAACTTCGGGCGGCGATGAACCGAATACGAAACAGGAAAACTCTAGAAGGACTTCGAATAACTCGGTGCGGAGTTCGGGCGACATGTCGGAAGAAGGGGGAAGAGAAAGAGGGATTCCGAGAGTGTCTGAAGATTTGAAAGACGCTCTGTCGACATTTCAACAAACATTTGTTGTGTCCGATGCTACAAAACCTGATTATCCGATTATGTATGCTAGTGCTGGATTTTTCAAGATGACTGGCTATACTTCCAAGGAGGTTATTGGAAGGAACTGTCGATTTTTACAGGGTGCGGATACGGACCCTGAAGATGTGGCTAAGATCCGAGAAGCTTTACAAGCGGGGACGAGTTACTGTGGAAGGTTGTTGAATTACAAGAAAGATGGGACCCCATTTTGGAACCTTCTTACTATTTCACCAATCAAAGATGATGATGGCAAAGTTCTTAAATTTATTGGAATGCAAGTGGAGGTGAGCAAACACACGGAGGGATTTAAAGATAAGATGGTCCGTCCCAATGGCTTGCCAGAATCCTTGATTCGTTATGATGCCCGTCAAAAGGAGATGGCTACAAGTTCGGTAACGGAGCTTGTGCAGGCGGTGAAAAGGCCTCGGTCTGTAAGTGAATATAGGCCTCGGGCTCTAAGTGAATCAATGAACCGCCGGTTATTTAGAAAATCAGGCGGTGGCGGCGGCGGCGGCGGTGACAACAACGACGACAGATTTGAAACCACTATGATTAGGCGAAAGTCAGAGAGTGCAGCACCTCCAACTGGTCGGAAATCGCAGGGAGGAAGTAGAAGATCGATGCAGCGTATCAACGAGCTGCCGGAGAAGAAACCCAAAAAGTCTAGCCGTCGTTCATTTATGGGGATTATGAGGAAAAGTCAATCAAATGTTGAAAGCATTGACATTGAAGATGGTTCCGTGGAGGATAATGAGACCGATGACGATGTTCGGCCAGATAGCGTCGACGACAAAGTAAGGCAGAGGGAAATGAGGAAGGGTATTGATTTAGCTACTACCCTTGAACGTATAGAGAAAAACTTTGTGATTACTGATCCTAGATTGCCCGACAATCCCATTATATTTGCATCTGATAGCTTCCTGGAGCTAACCGAATTTCTGCAAGGTCCTGAAACCGATCGAGCAACCGTCAAGAAAATAAGAGATGCAATCGACAATCAAACAGAAGTTACAGTGCAGCTTATTAACTACACAAAAAGCGGTAAGAAGTTTTGGAACCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGTGAAGTCCAGTATTTTATTGGAGTACAACTCGACGGTAGTCAACATGTGGAACCGCTAAGCAATTGCATACCGGATAATACTGCAAAGGAAGGAGAGAAATTGATAAAAGAAACCGCAGAAAATGTTGATTTGGCAGCCAGAGAACTTCCTGATGCCAATTTGACACCAGAAGATTTATGGGCAAATCACTCTAAGATGGTTCAACCAAAACCTCACAGAAAGGATAGTCCTTCTTGGAAAGCTATCCAGAAGATTTTAGACAGCGGAGAACAGATAGGACTGAAACATTTCAAGCCAGTGAAGCCTTTGGGATCCGGTGATACTGGCAGCGTGCATTTGGTAGAATTGTGTGGGACTGATCAATATTTTGCAATGAAGGCAATGGATAAGGGTGTAATGCTCAACCGCAACAAGGTCCATAGAGCTTGCGCCGAGAGGGAAATACTTGACATGTTGGATCATCCTTTTCTTCCTGCATTATACGCTTCATTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGCCCTGGTGGAGAACTCTTTCTGCTTTTGGATAGACAACCCACAAAGGTCATAAAGGAAGATGCTGTAAGGTTTTATGCTGCTGAAGTTATCGTCGCATTGGAATATCTCCATTGTCAAGGGATAATTTACCGGGATCTAAAGCCTGAGAATGTTCTACTCCAAAGCAACGGACACGTTGCCTTGACGGATTTTGACTTGTCATGTTTGACTTCTTGTAAACCTCAGCTTTTGCTTCCAACAACAAATGAGAAGAAAAAGCAATCAAGAGCTCAACAAGCTCCGATCTTTATGGCCGAACCAATGCGAGCATCGAACTCCTTCGTCGGAACCGAAGAGTACATAGCACCGGAAATCATTACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGTATTCTTCTATATGAAATGCTTTATGGATATACACCCTTTAGAGGGAAGACAAGGCAAAAGACATTTGCTAACATTCTTCATAAGGATCTTAAATTTCCAAGAAGTATATCGGCTAGTCTCAATGCAAAGCAGTTAATCTTTAGGTTATTGCATAGAGATCCCAAAAACCGATTAGGTTCTCGAGAAGGAGCTAGCGAAATCAAACGACATCCTTTCTTCCGAGGCGTCAATTGGGCGCTGGTTCGTTGCATGAATCCTCCCGAGCTCGAAGCGCCTCTTTTCCAGGCGACCGATGCCGAAAAAGATGCTAATAAGGCATCAGATTTTGATCTAAAAGAACTTGAACTCAGTGTTTTCTGA | 3006 | 46.01 | MEPLDKPAPKSSPLAPFPRDSRGSLEVFNPSATYTSRPRANPTWPNWVEPRSSAESDSAKLVAKPVSKTGEEITSWMAFKDSNPSPQPSSPLAQKTISAILSDKSPTGKAKSADEVGSAALRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPNTKQENSRRTSNNSVRSSGDMSEEGGRERGIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKEMATSSVTELVQAVKRPRSVSEYRPRALSESMNRRLFRKSGGGGGGGGDNNDDRFETTMIRRKSESAAPPTGRKSQGGSRRSMQRINELPEKKPKKSSRRSFMGIMRKSQSNVESIDIEDGSVEDNETDDDVRPDSVDDKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEFLQGPETDRATVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNCIPDNTAKEGEKLIKETAENVDLAARELPDANLTPEDLWANHSKMVQPKPHRKDSPSWKAIQKILDSGEQIGLKHFKPVKPLGSGDTGSVHLVELCGTDQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVIKEDAVRFYAAEVIVALEYLHCQGIIYRDLKPENVLLQSNGHVALTDFDLSCLTSCKPQLLLPTTNEKKKQSRAQQAPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSISASLNAKQLIFRLLHRDPKNRLGSREGASEIKRHPFFRGVNWALVRCMNPPELEAPLFQATDAEKDANKASDFDLKELELSVF | 1001 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 34164485 | 34176019 | - | CaPI482276_02g021400.1 | Cam02g2140 | 121882 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam02g2140 | 1001 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 789 | 801 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam02g2140 | 1001 | MobiDBLite | consensus disorder prediction | 347 | 473 | - | - | |
Cam02g2140 | 1001 | ProSiteProfiles | PAS repeat profile. | 186 | 257 | IPR000014 | - | |
Cam02g2140 | 1001 | MobiDBLite | consensus disorder prediction | 400 | 414 | - | - | |
Cam02g2140 | 1001 | FunFam | Putative LOV domain-containing protein | 752 | 967 | - | - | |
Cam02g2140 | 1001 | Pfam | Protein kinase domain | 670 | 955 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam02g2140 | 1001 | ProSiteProfiles | Protein kinase domain profile. | 668 | 955 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam02g2140 | 1001 | MobiDBLite | consensus disorder prediction | 1 | 114 | - | - | |
Cam02g2140 | 1001 | Pfam | PAS domain | 502 | 582 | IPR000014 | - | |
Cam02g2140 | 1001 | Pfam | PAS domain | 207 | 303 | IPR000014 | - | |
Cam02g2140 | 1001 | SMART | pac_2 | 263 | 305 | IPR001610 | - | |
Cam02g2140 | 1001 | SMART | pac_2 | 544 | 586 | IPR001610 | - | |
Cam02g2140 | 1001 | FunFam | LOV domain-containing protein | 468 | 620 | - | - | |
Cam02g2140 | 1001 | MobiDBLite | consensus disorder prediction | 76 | 105 | - | - | |
Cam02g2140 | 1001 | PANTHER | FLIPPASE KINASE 1-RELATED | 627 | 977 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Cam02g2140 | 1001 | MobiDBLite | consensus disorder prediction | 449 | 463 | - | - | |
Cam02g2140 | 1001 | MobiDBLite | consensus disorder prediction | 147 | 172 | - | - | |
Cam02g2140 | 1001 | ProSiteProfiles | PAC domain profile. | 260 | 314 | IPR000700 | - | |
Cam02g2140 | 1001 | SUPERFAMILY | Protein kinase-like (PK-like) | 645 | 976 | IPR011009 | - | |
Cam02g2140 | 1001 | Gene3D | Transferase(Phosphotransferase) domain 1 | 752 | 966 | - | - | |
Cam02g2140 | 1001 | MobiDBLite | consensus disorder prediction | 350 | 364 | - | - | |
Cam02g2140 | 1001 | FunFam | LOV domain-containing protein | 667 | 751 | - | - | |
Cam02g2140 | 1001 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 207 | 299 | IPR035965 | - | |
Cam02g2140 | 1001 | MobiDBLite | consensus disorder prediction | 131 | 184 | - | - | |
Cam02g2140 | 1001 | Gene3D | PAS domain | 467 | 620 | - | - | |
Cam02g2140 | 1001 | MobiDBLite | consensus disorder prediction | 26 | 53 | - | - | |
Cam02g2140 | 1001 | SMART | serkin_6 | 668 | 955 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam02g2140 | 1001 | MobiDBLite | consensus disorder prediction | 434 | 448 | - | - | |
Cam02g2140 | 1001 | NCBIfam | PAS domain S-box protein | 213 | 305 | IPR000014 | - | |
Cam02g2140 | 1001 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 495 | 582 | IPR035965 | - | |
Cam02g2140 | 1001 | CDD | STKc_phototropin_like | 666 | 974 | - | - | |
Cam02g2140 | 1001 | Gene3D | Phosphorylase Kinase; domain 1 | 667 | 751 | - | - | |
Cam02g2140 | 1001 | ProSiteProfiles | PAC domain profile. | 541 | 595 | IPR000700 | - | |
Cam02g2140 | 1001 | Gene3D | PAS domain | 200 | 356 | - | - | |
Cam02g2140 | 1001 | ProSitePatterns | Protein kinases ATP-binding region signature. | 674 | 697 | IPR017441 | GO:0005524(InterPro) | |
Cam02g2140 | 1001 | CDD | PAS | 213 | 302 | IPR000014 | - | |
Cam02g2140 | 1001 | FunFam | Putative LOV domain-containing protein | 200 | 356 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g1111 | Cam-Chr2:20543612 | Cam02g2140 | Cam-Chr2:34164485 | 1.10E-304 | dispersed | |
Cam02g2140 | Cam-Chr2:34164485 | Cam02g2273 | Cam-Chr2:35358595 | 5.30E-98 | dispersed | |
Cam02g2140 | Cam-Chr2:34164485 | Cam02g0326 | Cam-Chr2:3996590 | 5.40E-228 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84999 | PF00069 | Pkinase | 4.20E-63 | CL0016 | Cam | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam02g2140 | K20715 | - | csv:101214662 | 1842.78 |