Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2142 ATGGGTTGCTTTAGCCATATCAAAAAGCAGAGGAAAAGATTATTAGGGAGCAATGTACAAAGCATTCAACAAGCTTCTTCAGCAAAAGTAAAAGCGGATCTGAAAGTAAAAACAAGGGAAGAAGTAAAAGAGATGGTTTATGAAAATGAGCAGCTGGCGTCAAATATAAACAAAGAGGTTTCGAGTGAAGCAAAAACAAAGGAAGAGATAGAAACATTTACATTTCAGGAACTTGCAGCCGCAACAAGAAATTTCAAGTCGGATTGCTTTCTGGGCGAAGGAGGATTTGGTAAGGTTTACAAGGGCCATTTGGGAAGAATCAACAAGCTTGTAGCTATAAAGCAACTTGATCGGAATGGGATTCAAGGGGCAAGAGAATTCGTGGTGGAAGTGGTGACATTAAGTTTGGCGAATCATCCAAATCTTGTAAAATTGATTGGGTATTGTGCTGAGGGTGATCAAAGACTCTTAGTTTACGAGTTCATGCCATTAGGCTCATTGGACAAACATTTGCACGATGTTCCACTAGGGAAAAAAGTGCTTGATTGGAATACAAGAATGAAGATAGCAGTGGGAGCAGCAAAAGGATTGGAATATTTACACAACAAAATGAGGCCAGCAGTTATATATAGAGACTTAAAATGCTCCAATATTTTGTTGGGTGAAGGTTATTGGCCAAAGCTTTCAGATTTTGGTCTAGCCAAAGTGGGTCCTAGTGGAGATAACACTCATGTCTCAACTAGAGTTATGGGAACTTATGGATATTGTGCACCAGATTATGCAATGACTGGCCAATTGACATTCAAATGTGATATCTATAGCTTTGGAGTTGTTCTATTGGAACTCATCACTGGAAGAAAAGCCATTGACTATACAAGACCTTCAAAGGAGCTGAGTTTGGTAGCATGGGCAAGACCATTGTTCCGAGACCGAAAGAGGTTCTTGGTAATGGCGGACCCAAGGCTGGACGGTCAATTTCCCATTAGAGGATTGTATCAAGCTCTTGCCATTGCAGCAATGTGTCTACAAGAACAACCTACAATGAGGCCACTTATATCTGAAATCGTCACTGCTTTAAATTTCCTTGCTTCTCAAAATTTTACTCAAAGAAGAAGGGATTAA 1122 39.93 MGCFSHIKKQRKRLLGSNVQSIQQASSAKVKADLKVKTREEVKEMVYENEQLASNINKEVSSEAKTKEEIETFTFQELAAATRNFKSDCFLGEGGFGKVYKGHLGRINKLVAIKQLDRNGIQGAREFVVEVVTLSLANHPNLVKLIGYCAEGDQRLLVYEFMPLGSLDKHLHDVPLGKKVLDWNTRMKIAVGAAKGLEYLHNKMRPAVIYRDLKCSNILLGEGYWPKLSDFGLAKVGPSGDNTHVSTRVMGTYGYCAPDYAMTGQLTFKCDIYSFGVVLLELITGRKAIDYTRPSKELSLVAWARPLFRDRKRFLVMADPRLDGQFPIRGLYQALAIAAMCLQEQPTMRPLISEIVTALNFLASQNFTQRRRD 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34187682 34193027 - CaPI482276_02g021420.1 Cam02g2142 121884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2142 373 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524(InterPro)
Cam02g2142 373 Gene3D Phosphorylase Kinase; domain 1 53 161 - -
Cam02g2142 373 Gene3D Transferase(Phosphotransferase) domain 1 162 372 - -
Cam02g2142 373 CDD STKc_IRAK 91 360 - -
Cam02g2142 373 PANTHER OS07G0668900 PROTEIN 41 369 - -
Cam02g2142 373 PIRSF ILK 15 372 - -
Cam02g2142 373 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g2142 373 SMART serkin_6 85 362 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g2142 373 SUPERFAMILY Protein kinase-like (PK-like) 70 366 IPR011009 -
Cam02g2142 373 FunFam probable serine/threonine-protein kinase RLCKVII 57 161 - -
Cam02g2142 373 Pfam Protein kinase domain 90 356 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g2142 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam02g2142 373 FunFam Serine/threonine-protein kinase PBS1 162 373 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2142 Cam-Chr2:34187682 Cam05g0685 Cam-Chr5:5961838 1.80E-131 dispersed
Cam10g2032 Cam-Chr10:34163794 Cam02g2142 Cam-Chr2:34187682 2.60E-133 wgd
Cam02g2142 Cam-Chr2:34187682 Cam03g0216 Cam-Chr3:3148710 1.70E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85000 PF00069 Pkinase 2.50E-42 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2142 - - - 0.0