Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2147 ATGTTTGATCTTAATCTCAATGTTGACTCGCCTGATGCCTCTCAGAATGAGAACTCCGTTGTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAACCAAATGGATGAGTCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGCGGCGATGACGACTCGTGTTCCACACGCGCCGGTGGTGAGCTCTTCACGTTCAGCTTCGAGATATTGAAGGCTGGAAGCGCGAACGACGTTGTTACGAAGGAGCTTTTTCCAATAGGTGGAGCGCTGAATGCTGACTTCGGGATTCTTCAGGGGCATAACTCCGCCTCTTCTTCGTCAACTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGGTCAGCAGGGGAGGGGAGAGTGGTTCAGCCGGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATCTGGGACTGTGGGAAGCAAGTCTATCTCGGTGGATTCGACACTGCACATTCTGCAGCAAGAGCATACGATCGAGCTGCTATCAAGTTCAGAGGGGTCGATGCTGACATTAATTTCAATCTTAGTGATTATGAGGATGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGTACTGGTTTCTCAAGAGGGAGCTCCAAATATAGAGGGGTTACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTTGGGCTATTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTGACCAACTTTGAGCCTAGCACATACGGAGAGAGAATTTCTGAGGGCGGCAGTGAAGGTGGGCGGAACATGCTCGATTTGAATTTAGGGATTTCACCTCCCTCACTTAACAACTGTCCAAAGGATACTGAGGGGCATCTGCGGTTTCAATCTGGTCCTTGTTATGCTAACGACAGGAGCACAATGATGGAGAGCAATGCTGATGCAGCAGTTAGCGATCCACCTTTGAAAGGACCGGTAATGACATCAGAGCATGCTCCCTTATGGAATGGTTTACAAACTAGCTTCTTTCCCTCTGAGGAAATCGTGACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGAGTCACCCCCAACTGGGGATGGCAAATTCATAGCCAGGTTAATTCCACCCAAGTGCCACTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATCCATCCACTGTGCCGTCCGGGCTCGACCGCCCATAACCTCCATTTCACTTCTGCCAAGGCTTCCCTCAACTCCCCTCAGTATCACCACCAGTTGAACCCACAACAGTGA 1476 50.2 MFDLNLNVDSPDASQNENSVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFSFEILKAGSANDVVTKELFPIGGALNADFGILQGHNSASSSSTSSRKNWINLAFDRSGSAGEGRVVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYGERISEGGSEGGRNMLDLNLGISPPSLNNCPKDTEGHLRFQSGPCYANDRSTMMESNADAAVSDPPLKGPVMTSEHAPLWNGLQTSFFPSEEIVTEKRLALGSSQGVTPNWGWQIHSQVNSTQVPLFSAAASSGFSFSATHFPAAIHPLCRPGSTAHNLHFTSAKASLNSPQYHHQLNPQQ 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34252111 34255983 - CaPI482276_02g021470.1 Cam02g2147 121889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2147 491 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2147 491 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2147 491 Pfam AP2 domain 157 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2147 491 Pfam AP2 domain 248 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2147 491 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677(InterPro)
Cam02g2147 491 CDD AP2 157 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2147 491 FunFam AP2-like ethylene-responsive transcription factor 248 308 - -
Cam02g2147 491 MobiDBLite consensus disorder prediction 28 58 - -
Cam02g2147 491 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677(InterPro)
Cam02g2147 491 MobiDBLite consensus disorder prediction 131 158 - -
Cam02g2147 491 CDD AP2 248 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2147 491 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2147 491 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2147 491 FunFam AP2-like ethylene-responsive transcription factor 156 215 - -
Cam02g2147 491 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2147 491 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2147 491 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 66 333 - -
Cam02g2147 491 SMART rav1_2 249 312 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2147 491 SMART rav1_2 157 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1739 Cam-Chr1:30987597 Cam02g2147 Cam-Chr2:34252111 4.00E-91 dispersed
Cam02g1278 Cam-Chr2:25056500 Cam02g2147 Cam-Chr2:34252111 4.50E-91 dispersed
Cam02g1437 Cam-Chr2:27212324 Cam02g2147 Cam-Chr2:34252111 3.50E-70 dispersed
Cam02g2147 Cam-Chr2:34252111 Cam07g1158 Cam-Chr7:25946112 3.50E-47 dispersed
Cam10g2027 Cam-Chr10:34123261 Cam02g2147 Cam-Chr2:34252111 1.30E-106 wgd
Cam02g2147 Cam-Chr2:34252111 Cam04g0845 Cam-Chr4:22670180 1.20E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51575 PF00847 AP2 3.10E-09 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2147 K09284 - csv:101222024 912.524