Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2159 ATGGAAGGGAGTGATTCAATCGCCACCGTTTCATCAACTCCGCTATCTCAATCTCCTTCTTCTTCTTCTTCTCCGGCACCGCCGCCGCCCGTCGTTCTCAGTCCATGTGCGGCCTGCAAGATTTTGAGACGGCGATGTGCCGAACGATGTGTTTTGGCGCCTTATTTCCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCCAGCAATATCATCAAATTCTTGCAGGAACTGCCTGAATCTCAAAGGGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCGAGAATTAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTTCAAAAGCAAGTCAATGAGCTTCAAGCGCAGCTAGCCAAGGCTCAGGCTGAGGTTGTGAACATGCAATGCCAACAAGCCAATCTTGTGGCCTTTGTTTGCAGGGAATTGGCTCAGTCTCATCATCAGTCTTTTGATGATTTCAATGGCAGCCCTCATAATGGCTTATTATTCCAGAGCATCAGCCCAAGCTACTTTGATGATAGCAATGTAAACTCATTGTGGGAACCTCTTTGGACATGA 591 49.07 MEGSDSIATVSSTPLSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSISPSYFDDSNVNSLWEPLWT 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34387261 34388395 + CaPI482276_02g021590.1 Cam02g2159 121901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2159 196 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Cam02g2159 196 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Cam02g2159 196 Coils Coil 114 141 - -
Cam02g2159 196 MobiDBLite consensus disorder prediction 1 20 - -
Cam02g2159 196 MobiDBLite consensus disorder prediction 1 30 - -
Cam02g2159 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2159 Cam-Chr2:34387261 Cam03g0244 Cam-Chr3:3559117 2.40E-55 dispersed
Cam02g1446 Cam-Chr2:27333997 Cam02g2159 Cam-Chr2:34387261 4.30E-51 transposed
Cam02g2159 Cam-Chr2:34387261 Cam03g0241 Cam-Chr3:3530318 7.00E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51577 PF03195 LOB 3.80E-41 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2159 - - - 0.0