Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2172 ATGCAGAAAAGAGTTGTACTCATACTGCTCACTGCTAACTGCTTTATTGGTATCCCTTCAGGATATGTTTTCAGCATTCTTTACCATGATTTGACCTCATTTCCAGTTTTCTACAGCTTTGGTCTTCTTGTCACCTTATTGCCAATTGATCACTCCGCGCCATTCCCCTTTCTTGTTTTAGTTCTGTTGGGAAGCTTAGCAATAGGACACTTGAATGAGGTGGGGAAGAATGCATATTGCTATGGAAATTGTGAAGAGGGTCTTTGCAATTGTTGCTTATCCTCTTCAACTTCTTCTTGTTCCTCAAATTCATCGCCAACGCCCGCCTCTTCTTCAACCTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCATTGCCTAAGAAAGGAAATGTAGTTGTCTATTTCCCACAAGGTCACTTGGAACAAATTGCCTCAGCCTCTCCCTTTTCCCCCATGGAGATGCGCACTTTTGACCTTCAGCCACAGATCCTCTGCAGGGTCATCAATGTCCACCTACTTGCCAATAAGGAGAATGATGAGGTCTATACACAGCTTACTCTCCTTCCCTTGCCAGAGTTAGTAGGCACTGGTCTAGAGGGCAAAGAGCTGGAGGAATTGGCGTTGAATGGGGCTGATGGAGATGGGAGTGGAGGGTCGCCTACTAGATCTACACCTCACATGTTCTGCAAAACACTCACAGCGTCTGACACGAGCACCCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTCCCTCCTCTGGATTACACTCAGCTTAGGCCATCTCAAGAGCTAATAGCCAAGGACCTGCATGGCGTGGAGTGGAGATTTAAACATATTTACAGAGGTCAACCTAGGCGGCATCTGCTCACTACTGGATGGAGTATTTTTGTAAGCCAAAAGAATCTTACTTCTGGGGATGCAGTGCTGTTTTTAAGGGGTGAAAATGGAGAGTTAAGGTTGGGAATAAGGCGAGCTGTTCGGCCTAGAAATGGTCTTCCTGTTTCAATTGTTGGCAGCCAAAATTCTTGTGCAAACGATCTTGCTCGTGTGGTGAAAGCAATATCCACCAAGAGCACATTTGATGTGTTTTATAATCCAAGGGCATATCATGCACAATTTGTTATATCTTGTCAGAAGTATGTGAAAAGCATCAATAATCCGGTGACTGTAGGCACAAGATTCAAAATGAGATTTGAGATGGATGATTCGCCAGAAAGAAGGTTTAATGGTGTAGTTGTTGGAATTGGTGACATGGATCCCTTTAGATGGCCGAACTCAAAGTGGAGATGCTTAACGGTCCGATGGGATAAAGACAGTGATCATCAAGAACGTGTTTCCCCCTGGGAGATTGATCCTTCTGTTTCTCTCCCACCCTTGAGTGTTCAGTCGTCTCCAAGACTGAAGAAGCTGAGGACTAGTCTGCAGGCAGCCCCACCTAATAACGCCTTTACTGGGAGGGGCGGTTTTATGGACTTTGAGGATTCAATTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATATAGGTGTCGTATCACCCTTTTATGGATGTGATACTGCAAAACGTTCACTGGAGTTTGATGTGCGATCTTCTGCACAACAAAACCAAGTGTCAGGTGGAGTTGAAAAACTCAATATAGGTGATTATGTAAAGGTTCATGCGAACTCTTCTTTCACAGGCTTTATGGAATCTGATAGATTTCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACCAACTAGAAAACCAGAATATAGTTTAGGTGTTTGGGGGAAGTTCAATCTCAGTGACAACTCTTTTAATACATTTCAATCACCAAACTCCAATTTTTATCACATGGCGTCTAATGGTGCCCAAAACATGTATTTCCCTCATAGTGAAATGTACAGTACTGGCCAAGCGGCCATGATGCGCTCAAATGATAGCAACTTTCCAAGAGAGAATGCCTTGTTCAACCCATCTGCTGTTGGTGCTAGTGTTATCAGGACTAAAATGGAAAGGACTAATCGTTCACTTGATCGGGAGTCTCTACATCTAGTGTCTGCTCCTCCAACTTTAGGGTCGAATATGAGGAATTCAAAGGATGAAAATGTGAGTGAGAACCCAACTGGCTGTAAACTTTTTGGCTTTTCATTGACTACGGAAACTGCTACAAACATGCAAAGTTCAGGAAAGAGAAGTTGTACCAAGGTTCACAAACAAGGCAGCCTGGTGGGAAGAGCTATTGATCTCTCTAGGCTGAATGGCTATCCCGATCTGATTTCTGAACTGGAGCGGTTGTTTAGCATGGAAGGTCTCTTAAAAGATCCTGATAAAGGATGGCGAGTGTTGTACACTGACAACGAAAATGACGTAATGGTTGTTGGGGATTATCCATGGCGTGACTTCTGTGACGCGGTTTCCAAAATCCATATACACACTCAAGAAGAAGTGGAAAAGATGACAAATGGAGTGATCAGTGATGATACTCAAAGCTGCTTAGACCAGGCTCCTTTATGTATGGAAGCATCAAAATCCTCTTCAGTGGGCCAACCTGATTCTCCTCCAACAGTACTCGAAGTCGGTAGCTTTGCTGCCATGAACGGCGTCATATAG 2625 44.15 MQKRVVLILLTANCFIGIPSGYVFSILYHDLTSFPVFYSFGLLVTLLPIDHSAPFPFLVLVLLGSLAIGHLNEVGKNAYCYGNCEEGLCNCCLSSSTSSCSSNSSPTPASSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQIASASPFSPMEMRTFDLQPQILCRVINVHLLANKENDEVYTQLTLLPLPELVGTGLEGKELEELALNGADGDGSGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLTSGDAVLFLRGENGELRLGIRRAVRPRNGLPVSIVGSQNSCANDLARVVKAISTKSTFDVFYNPRAYHAQFVISCQKYVKSINNPVTVGTRFKMRFEMDDSPERRFNGVVVGIGDMDPFRWPNSKWRCLTVRWDKDSDHQERVSPWEIDPSVSLPPLSVQSSPRLKKLRTSLQAAPPNNAFTGRGGFMDFEDSIRSSKVLQGQENIGVVSPFYGCDTAKRSLEFDVRSSAQQNQVSGGVEKLNIGDYVKVHANSSFTGFMESDRFLKVLQGQEICSLRPPTRKPEYSLGVWGKFNLSDNSFNTFQSPNSNFYHMASNGAQNMYFPHSEMYSTGQAAMMRSNDSNFPRENALFNPSAVGASVIRTKMERTNRSLDRESLHLVSAPPTLGSNMRNSKDENVSENPTGCKLFGFSLTTETATNMQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYPDLISELERLFSMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWRDFCDAVSKIHIHTQEEVEKMTNGVISDDTQSCLDQAPLCMEASKSSSVGQPDSPPTVLEVGSFAAMNGVI 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34465835 34473592 - CaPI482276_02g021720.1 Cam02g2172 121914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2172 874 MobiDBLite consensus disorder prediction 691 710 - -
Cam02g2172 874 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 113 826 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam02g2172 874 SUPERFAMILY DNA-binding pseudobarrel domain 225 342 IPR015300 -
Cam02g2172 874 Gene3D - 395 464 - -
Cam02g2172 874 Pfam Auxin response factor 358 438 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam02g2172 874 Pfam AUX/IAA family 726 820 IPR033389 -
Cam02g2172 874 ProSiteProfiles B3 DNA-binding domain profile. 231 333 IPR003340 GO:0003677(InterPro)
Cam02g2172 874 Gene3D - 732 825 - -
Cam02g2172 874 MobiDBLite consensus disorder prediction 692 710 - -
Cam02g2172 874 FunFam Auxin response factor 394 464 - -
Cam02g2172 874 Pfam B3 DNA binding domain 231 332 IPR003340 GO:0003677(InterPro)
Cam02g2172 874 SMART B3_2 231 333 IPR003340 GO:0003677(InterPro)
Cam02g2172 874 Gene3D - 229 333 IPR015300 -
Cam02g2172 874 ProSiteProfiles PB1 domain profile. 736 818 IPR053793 -
Cam02g2172 874 SUPERFAMILY CAD & PB1 domains 738 815 - -
Cam02g2172 874 CDD B3_DNA 229 331 IPR003340 GO:0003677(InterPro)
Cam02g2172 874 FunFam Auxin response factor 229 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2396 Cam-Chr1:35898574 Cam02g2172 Cam-Chr2:34465835 2.70E-128 dispersed
Cam02g2172 Cam-Chr2:34465835 Cam06g1977 Cam-Chr6:30542653 7.20E-136 dispersed
Cam02g2172 Cam-Chr2:34465835 Cam09g0937 Cam-Chr9:9621923 9.80E-125 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51578 PF02362 B3 7.90E-21 CL0405 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2172 K14486 - csv:101212503 1483.0