Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2177 ATGACCGTAATCGACATCATCTTCCGAGTCGATTCCATTTGCAAGAAATATGAGAAGTATGATGTCGAGAAACAGCGTGAACTCAATGCTTATGGTGACGATGCCTTTGCTCGCCTCTTCGCCGCCGTCGAACTCGAAATCGACGCCGCTCTCCAGAAATCTGAGGCTGCCTCAACTGAGAAGAATAGAGCTGCTGCAGTTGCAATGAACGCTGAGGTTCGACGGAAGAAGGCTCGATTGATGGATGAAGTCCCTAAGCTTCGTAAATTGGCTCATAAGAAGGTTAAAGGGGTTCCGAAAGAAGAGCTGGAGGTCAGAGATGATCTTGTTCTTGCGCTTGAAGAGAAGATTAAAGCCATACCAGATGGGAGTACCTCAGGAGCCAAACAATCTGGAGGATGGGGGTCCTCCTCATCTAACAATATCAAGTTTGATTCATCAGATGGAAACTTTGAGAGCGAGTATTTCCAGCAAAGTGAAGAATCAAGCCAATTTCGAAATGAGTATGAAATGCGGAAGATGAAACAGGACCAAGGTCTCGATGTCATATCTGAAGGTTTGGATATGCTGAAAAATCTAGCCCATGATATGAATGAGGAATTGGACAGGCAAGTTCCATTAATCGACGAGATCGACGCAAAGGTAGACAAGGTGACTGATGAGATTAAAAATACCAATGTTAGGCTCAAGGAAACGCTCTATGAGGTGAGATCCAGCCAAAACTTCTGCATTGATATTATTCTTCTCTGTATAATTCTTGGAATTGCTTCTTACTTGTACAATATCTTGAGCTGA 795 43.65 MTVIDIIFRVDSICKKYEKYDVEKQRELNAYGDDAFARLFAAVELEIDAALQKSEAASTEKNRAAAVAMNAEVRRKKARLMDEVPKLRKLAHKKVKGVPKEELEVRDDLVLALEEKIKAIPDGSTSGAKQSGGWGSSSSNNIKFDSSDGNFESEYFQQSEESSQFRNEYEMRKMKQDQGLDVISEGLDMLKNLAHDMNEELDRQVPLIDEIDAKVDKVTDEIKNTNVRLKETLYEVRSSQNFCIDIILLCIILGIASYLYNILS 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34522608 34525035 + CaPI482276_02g021770.1 Cam02g2177 121919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2177 264 MobiDBLite consensus disorder prediction 124 143 - -
Cam02g2177 264 MobiDBLite consensus disorder prediction 122 143 - -
Cam02g2177 264 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Cam02g2177 264 Coils Coil 208 228 - -
Cam02g2177 264 PANTHER SYNTAXIN 45 250 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cam02g2177 264 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cam02g2177 264 SMART tSNARE_6 165 232 IPR000727 -
Cam02g2177 264 FunFam Putative syntaxin-71-like 170 231 - -
Cam02g2177 264 SUPERFAMILY SNARE fusion complex 166 230 - -
Cam02g2177 264 CDD SNARE_Qc 175 231 - -
Cam02g2177 264 Gene3D - 170 231 - -
Cam02g2177 264 Pfam SNARE domain 207 256 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g2004 Cam-Chr10:33921121 Cam02g2177 Cam-Chr2:34522608 3.60E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2177 K08506 - csv:101211289 454.136