Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2188 ATGGCCATGGCTATAGCTCATCATAGAGAGAGCAGTAGTGGGAGTATAACCAGGCATCTTGATAGTTCTGGGAAGTACGTTCGATACACTGCAGAGCAGGTGGAGGCTCTTGAGCGAGTCTATGCTGAGTGCCCCAAGCCAAGTTCTCTTCGACGCCAGCAGCTTGTTCGGGAGTGCCCAATTCTTTCCAACATAGAACCCAAGCAGATCAAAGTTTGGTTTCAGAATCGCAGATGTAGGGAGAAGCAAAGGAAGGAGGCTTCTCGGCTGCAAACAGTGAACAGAAAATTGAATGCTATGAACAAGCTGTTAATGGAGGAGAATGATCGACTGCAGAAGCAAGTTTCGCAATTGGTGTGTGAAAATGGGTTTATGAGGCAGCAATTGCAAACAGTGCCAGCAGCAGCAACTACTGATGCAAGCTGTGATTCTGTGGTCACCACTCCTCAACCCTCTCGACGTGATGCTAATAACCCAGCTGGACTCCTCTCCATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATCTTTGCCATTTCACAAAGTTGTGGTGGAGTGGCAGCAAGAGCCTGTGGTCTTGTAAGTTTGGAGCCTTCGAAGATTGCAGAGATCCTTAAAGATCGTCCATCGTGGTTTCGTGATTGTCGAAGCCTTGAGGTTTTTACCATGTTTCCAGCTGGAAATGGCGGGACAATTGAACTTGTTTACACACAGGTATATGCTCCAACTACCCTTGCTCCTGCACGTGATTTTTGGACGCTAAGATATACGATAACCTTAGAAAACGGCAGCCTTGTGGTTTGCGAGAGATCGCTCTCTGGTTCTGGTGCCGGTCCTAGTGCAGCTGCTGCTGCTCAGTTTGTGAGAGCTGAGATGCTCCCAAGTGGATATCTGATTCGACCATGTGAGGGTGGTGGGTCCATTATACATATTGTTGATCACCTAAATCTTGAGGCATGGAATGTTCCTGAGGTGTTGCGACCACTTTATGAATCATCAAAAGTAGTGGCTCAGAAGATGACAATAGCAGCACTGCGGTACGTTAGGCAAATAGCCCAGGAGACAAGTGGTGAAGTGGTTTATGGTCTTGGCCGGCAACCTGCTGTTTTGCGGACCTTTAGCCAAAGATTGAGCAGGGGTTTTAATGATGCAGTGAATGGATTTAATGACAATGGATGGTCGTTGATTAATTGTGAAGGTGCTGAGGATGTGGTACTCACTGTGAATTCTACGAAAAATTTTGGCACAACATCGAACCCTGCTAACTCCTTGACATATCCTGGGGGAGTTCTTTGTGCAAAGGCATCCATGCTACTCCAAAATGTTCCTCCTGCTGTGTTAGTTCGTTTCTTGAGAGAACACCGCTCAGAGTGGGCTGATTTCAACATTGATGCATACTCTGCAGCAACCCTTAAGGCCAATTCATATGCATATCCAGGGATGAGACCCACAAGGTTTACTGGTAGCCAAATCATCATGCCACTCGGTCACACAATCGAGCACGAAGAGTTGCTTGAAGTAATTAGACTTGAAGGACATCCTATGGTACAAGAAGATGCTTTTGTTTCGAGAGACATTCATCTTCTTCAGATATGTAGTGGAATTGACGAGAATGCCGTAGGGGCCTGTTCAGAACTCATTTTTGCTCCTATTGATGAGATGTTTCCAGACGATGCTCCATTGCTGCCTTCTGGCTTTCGAATCATCCCATTGGATTCCAGAACAAGTGATGCAAAAGGTAGTCAACGGACTCTGGATCTAACATCGAGTCTTGAAGTGGGTTCTGGAACAAGCAATACTGCTGGAGATGCATCATCAAGTCAGAGTGCTAGATCGGTGTTAACCATAGCATTTCAGTTTCCTTTTGAAAGCAGCATGCAGGATAATGTTGCGAACATGGCACACCAGTACGTACGTAGCGTCATTTCCTCAGTACAGAGAGTTGCGATGGCCATATCTCCATCTGGAGGCAGTCCAGCGCTTGGTCCAAAGCTGTCTCCTGGTTCTCCAGAAGCTCTTACTCTAGCACATTGGATATGCAAGAGCTATAGTTTACAATTGGGAACGGAGTTGATCAAATCAGATTCCTTGGAAAGTGATTCCCTTTTGAAAAATCTCTGGAATCATCAGGATGCAATATTGTGCTGTTCGCTGAAGCAGTCACTGCCTGTTTTTCTGTTTGCAAACCAAGCTGGGCTTGACATGTTGGAGACAACTCTAGTGGCCTTACAAGACATCACGTTGGATAAGATATTTGACGAGTCGGGTCGCAAAGCCTTGTGTGCTGATTTCCCAAAGTTAATGCAGCAGGGATTTGCGTACTTGCCGGGAGGAATCTGTGCATCAACAATGGGACGACACGTTTCATACGAACAAGCCGTTGCATGGAAACCTTCTTCATTGGCTGTCCTCGTGCTCATCCATTGGAGCACGAGCAGGAGGAATGAAGATGAAGATAAAGATGTTTGTTCTTCAATGTCTAATGCAATGCCTCCTTCTCCAAACTGTGGCCACCGAAAGTTACTAACGTTCGGCTACCAACTAAGATTTGTGCATTGCTTTGGTGGGAAGGGAATGATCCAAGAAGAAAAGGTTTGTCTTCTTGTCTGGGACTGTTTACCAGTCTAA 2697 46.38 MAMAIAHHRESSSGSITRHLDSSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLVRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQTVPAAATTDASCDSVVTTPQPSRRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLEPSKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTITLENGSLVVCERSLSGSGAGPSAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQKMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSLINCEGAEDVVLTVNSTKNFGTTSNPANSLTYPGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNIDAYSAATLKANSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHPMVQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSRTSDAKGSQRTLDLTSSLEVGSGTSNTAGDASSSQSARSVLTIAFQFPFESSMQDNVANMAHQYVRSVISSVQRVAMAISPSGGSPALGPKLSPGSPEALTLAHWICKSYSLQLGTELIKSDSLESDSLLKNLWNHQDAILCCSLKQSLPVFLFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFPKLMQQGFAYLPGGICASTMGRHVSYEQAVAWKPSSLAVLVLIHWSTSRRNEDEDKDVCSSMSNAMPPSPNCGHRKLLTFGYQLRFVHCFGGKGMIQEEKVCLLVWDCLPV 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34611773 34618207 + CaPI482276_02g021880.1 Cam02g2188 121930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2188 898 Pfam START domain 165 373 IPR002913 GO:0008289(InterPro)
Cam02g2188 898 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
Cam02g2188 898 Coils Coil 80 121 - -
Cam02g2188 898 SMART START_1 164 374 IPR002913 GO:0008289(InterPro)
Cam02g2188 898 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
Cam02g2188 898 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 19 820 IPR044830 GO:0003700(InterPro)
Cam02g2188 898 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
Cam02g2188 898 CDD bZIP 77 116 - -
Cam02g2188 898 CDD START_ArGLABRA2_like 159 375 - -
Cam02g2188 898 Gene3D - 201 379 IPR023393 -
Cam02g2188 898 Gene3D - 19 91 - -
Cam02g2188 898 SUPERFAMILY Homeodomain-like 22 87 IPR009057 -
Cam02g2188 898 SUPERFAMILY Bet v1-like 164 376 - -
Cam02g2188 898 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289(InterPro)
Cam02g2188 898 MobiDBLite consensus disorder prediction 599 629 - -
Cam02g2188 898 Pfam MEKHLA domain 697 820 IPR013978 -
Cam02g2188 898 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
Cam02g2188 898 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1378 Cam-Chr1:27066925 Cam02g2188 Cam-Chr2:34611773 0.00E+00 dispersed
Cam02g2188 Cam-Chr2:34611773 Cam03g0818 Cam-Chr3:9533496 0.00E+00 dispersed
Cam02g2188 Cam-Chr2:34611773 Cam01g2569 Cam-Chr1:37337987 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51581 PF01852 START 4.60E-46 CL0209 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2188 K09338 - csv:101215773 1587.78