Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2195 ATGTCTATTTCATTGAACATTTCAAAGCCCATTTCCCCATTTCATTCAAATTCTGAGTTTCAACTCCTCATTTCGGCCACAACAACAACAAGCCCTTCTCTTCATGCTTTGAAACAGGCATGGAAAACCTTCCTCTTTAGTTTATGTGGCCTTGAATTCATGCCTTGTCATTTTCAGTTAACTCCATTAGAACTGCAGCCAAAGTTTTCATTTGGGAAGATCTTTATGGCTTATGGTAGTTCTAGATCCGTAAGGTTCCAAGACGATCTTGAATCATCTGCCCTGCCTACTATCAATGGTGGTGGTGTGACAAAGATCATATACAACATTGATGGCACACAAATACCGGAATCGAGCGGCAAGAGAACTTCGGCTTCTAGGAAGTCTGGAAGATCCCTGAGAGCTAAAGTTTTGTCTAGAGTTTTCTCAGAGGATTATGAGAGAGTACAAAGAAAAATATTGGATCCTAGGGGACAAGTCATAAGGCGATGGAATAAGATATTTTTAGTTGCTTGTTTAGTCTCTTTGTTTGTAGACCCTCTTTTCTTTTACTTGCCTGTGGTCAGGGATGAGGTGTGCATCGATATAGGAGTAGGTCTTGAAGTCGTCCTCACAACTATAAGATCAATAGCTGATGTTTTCTACACAATTCAGATTTTCATTAAGTTTCGTACAGCTTATGTTGCGCCCTCTTCTCGTGTATTTGGGAGAGGAGAGCTTGTGATAGATCCTTTTAAGATAGCAATAAGGTATCTACGTTATGGTTTCTGGATTGATCTCATTGCAGCCGTGCCAGTTCCCCAGGTACTGATCTGGATTGTAATCCCCAACCTTAGTGGTTCAACAATGACAAACACTAAGAACTTCCTAAGGTTCTTTCTCATATTCCAGTACCTCCCAAGGCTTTTTCTCATATTTCCTCTCTCAACACAAATTGTTAAGGCCACTGGACTTGTGACACAAACAGCATGGGCTGGAGCTGCTTATAACCTGATTCTTTATATGTTGGCAAGCCATGTTTTAGGAGCCTGCTGGTACCTTCTTTCAATTGAGCGACAAGAAGCATGCTGGAGAAGACTTTGTATGTTTGACAAATCTTGTAAAGATGGATTCTTCGACTGTCATAAGGTCGATGACCCTCAAAGGGACTCGTGGTTTAATATGAGCAACATTAAAAGCTCATGCAATCCAAGTGGTTCCTTTTATCAATTTGGTATATATGGTGATGCAATAACTTTCCATGTCACAACCTCACCATTTTTCAACAAGTACTTCTACTGTCTTTGGTGGGGCCTGAAAAATCTTAGTTCCTTAGGACAAAATCTTGCCACAAGCACTTTTGTTGGGGAAATAATTTTTGCCATTATTGTGGCAACTCTTGGACTGGTTCTGTTTGCATTGCTCATTGGTAATATGCAGAAATACCTCCAATCAACGACTGTTCGATTAGAAGAGTGGAGAATAAGGAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCCAGAGCTCAGACAATCTGTCCGCAGATATGATCAGTATAAGTGGGTAGCAACTCGAGGAGTCGATGAAGAAGTGCTGCTTAGAAGCCTTCCCTTGGATCTCCGAAGAGACATAAAACGTCACCTTTGCCTTGACCTCGTTCGAAGGGTTCCATTGTTTGATCAAATGGATGAAAGAATGCTAGATGCAATATGCGAGAGACTTAAACCTGCCTTGAGCACAGAAGGCACATATCTCGTGCGAGAAGGCGACCCAGTCAATGAAATGTTATTCATAATCAGAGGTCATCTCGACTCGTACACCACTAATGGTGGTAGAACCGGGTTTTTCAACTCTTGTCGTATTGGCCCCGGTGATTTCTGTGGTGAGGAGCTGCTGACTTGGGCTCTCGACCCTCGTCCAAGTGTTGTACTTCCTTCTTCCACTCGAACGGTCAAAGCCATCTCTGAGGTAGAAGCATTTGCTCTCATAGCAGAGGACTTGAAATTTGTATCCTCCCAGTTCAGAAGACTCCACAGCAAACAACTGAGACACAAGTTCCGATTCTACTCGCATCAATGGCGAACGTGGGCTGCATGCTTTGTTCAAGCAGCATGGCGGAGATATAAGAGACGAAAAGAGCGAGCTGAGCTCAGAGCTAGAGAGAACTATCCGGCTACCAAAGTTGAGTCCCCACTTTCACCACCACCGACATCGAACTTGGATTCACGTTCAGGAAATGCTAGAAGGGGATTGAATAAGCGTTGTGTGTCGGATGCTGGGGTCGTAAGCTCGTTGCAGAAGCCAGAAGAGCCTGACTTCTCCATTGTCGAGGAATAA 2328 43.21 MSISLNISKPISPFHSNSEFQLLISATTTTSPSLHALKQAWKTFLFSLCGLEFMPCHFQLTPLELQPKFSFGKIFMAYGSSRSVRFQDDLESSALPTINGGGVTKIIYNIDGTQIPESSGKRTSASRKSGRSLRAKVLSRVFSEDYERVQRKILDPRGQVIRRWNKIFLVACLVSLFVDPLFFYLPVVRDEVCIDIGVGLEVVLTTIRSIADVFYTIQIFIKFRTAYVAPSSRVFGRGELVIDPFKIAIRYLRYGFWIDLIAAVPVPQVLIWIVIPNLSGSTMTNTKNFLRFFLIFQYLPRLFLIFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRRLCMFDKSCKDGFFDCHKVDDPQRDSWFNMSNIKSSCNPSGSFYQFGIYGDAITFHVTTSPFFNKYFYCLWWGLKNLSSLGQNLATSTFVGEIIFAIIVATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRRYDQYKWVATRGVDEEVLLRSLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPALSTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVVLPSSTRTVKAISEVEAFALIAEDLKFVSSQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKRRKERAELRARENYPATKVESPLSPPPTSNLDSRSGNARRGLNKRCVSDAGVVSSLQKPEEPDFSIVEE 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34701455 34705445 - CaPI482276_02g021950.1 Cam02g2195 121937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2195 775 SMART cnmp_10 555 686 IPR000595 -
Cam02g2195 775 Pfam Cyclic nucleotide-binding domain 578 638 IPR000595 -
Cam02g2195 775 SUPERFAMILY Voltage-gated potassium channels 155 477 - -
Cam02g2195 775 CDD CAP_ED 555 686 IPR000595 -
Cam02g2195 775 ProSiteProfiles cAMP/cGMP binding motif profile. 555 652 IPR000595 -
Cam02g2195 775 Pfam Ion transport protein 163 482 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam02g2195 775 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 130 720 - -
Cam02g2195 775 FunFam Cyclic nucleotide-gated ion channel 1 553 671 - -
Cam02g2195 775 SUPERFAMILY cAMP-binding domain-like 485 680 IPR018490 -
Cam02g2195 775 MobiDBLite consensus disorder prediction 729 743 - -
Cam02g2195 775 Gene3D Jelly Rolls 553 673 IPR014710 -
Cam02g2195 775 Gene3D Helix hairpin bin 482 546 - -
Cam02g2195 775 MobiDBLite consensus disorder prediction 716 747 - -
Cam02g2195 775 Gene3D - 163 479 - -
Cam02g2195 775 PRINTS EAG/ELK/ERG potassium channel family signature 518 525 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cam02g2195 775 PRINTS EAG/ELK/ERG potassium channel family signature 468 477 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cam02g2195 775 PRINTS EAG/ELK/ERG potassium channel family signature 219 228 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cam02g2195 775 PRINTS EAG/ELK/ERG potassium channel family signature 336 346 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cam02g2195 775 PRINTS EAG/ELK/ERG potassium channel family signature 450 461 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cam02g2195 775 PRINTS EAG/ELK/ERG potassium channel family signature 424 441 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cam02g2195 775 FunFam Cyclic nucleotide-gated ion channel 1 482 546 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0049 Cam-Chr1:868856 Cam02g2195 Cam-Chr2:34701455 1.50E-187 dispersed
Cam02g2195 Cam-Chr2:34701455 Cam04g0821 Cam-Chr4:22484416 1.70E-216 dispersed
Cam02g2195 Cam-Chr2:34701455 Cam10g1241 Cam-Chr10:25824489 6.10E-203 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2195 K05391 - csv:101210775 1365.13