Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2230 ATGTCTTCTCGTCCTTCCGCGTTCGATGCTCTCATGTCTGGTGCTCGGGCCGCTGCCAAGAAAAAGCCTGTTAATTCTTCTCCCAAGAAGCGTAAAGCCCTTGATTCTTTAGACCCTCCTCCGAAACCTAGCTCTTCCCTTGCTCTGGAGTCAACGCCGGCTGTTGAATCGCAGTGCGGCAGTTCAATTGCAAATTTGGACAATCATGGAGGTACTCATCTGGTAAAGTCCGAGGACGCTGCTGATTTGGAGGAAACCAAGTTGCGTCAGGATAATGGTGGCAGTGTTGGACCCAAGAATGGGCCGTTTGCGAACAAGACGTGTGCGTCTAGTGTTCAAGAAAGAACTGCGAAATTGAAGAGCTCTATTCCAGAGTTGAAAAAGAAGGCCAAGGATTTCAACTCGAAGAATGTTGCATGTTGGAAAGAGGGCGAACGGGTTCCATTTTTGTTTCTGTGTTTGGGTTTCGATATGATTTCGGAGGAGTCTAGTAGGATTACTATCACCGATATAGTCTGCAACATGCTGAGGACCGTCATGGATACTACACCCGACGACTTGGTAGCCACTGTGTATCTTTTGGCGAATAAGATTGCTCCAGCACACGAAGGGCTTGAGTTGGGGATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTCAAAAAACAGTACAAGGAATTGGGAGATTTAGGTCTTGTTGCTAAAGCGAGCCGTTCATCTCAGTCTATGATGCGAAAGCCCGATGCTTTAACTATTACCAAAGTATTTGACACATTTCGGCTGATTGCTAAGGAATCTGGCAAGGATAGTCAGGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGTGAACCTTTATATCTGATTAGATTGCTGCAGACAAAATTGCGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTAGGACAAGCAGCTGTATATGCTGAAAAACACTCAACTCCACCACCAAATATTCAATCTCCTCTAGAAGAGGCTTCTAAGATTGTAAAGCAGGTGTATTCTATACTCCCAGTTTATGATAAACTTGTCCCTGCTCTTCTTAGTGGTGGTGTGTGGAATCTTTCAAAAACATGCAACTTTACACCCGGAATTCCAATTGGACCTATGCTGGCAAAACCAACGAAAGGAGTGTCTGAAATCTTAAATAAATTCCAGGGTATGGAATTTACTTGTGAATACAAATATGATGGGGAACGTGCCCAGATACATTACATGGAAGATGGTTCAGTTGAGATATACAGTCGAAATGCTGAACGGAACACTGGAAAGTTCCCTGACGTTGTTCTCACGGTAGCAAGGATAAAGAAACCATCTGTAAGATCATTTATTTTGGATTGTGAACTTGTTGCTTACGATCGTGGAAAACAAAAGATTCTGCCTTTTCAGATTCTGAGTACTCGAGCTCGTAAGAATGTGGCCCTGAGTGATATTAAGGTTGAAGTGTGTGTCTTTGCTTTTGATTTACTGTATCTTGATGGCCAACCACTTATTCAGAGAGAACTGAATGTTCGCCGAGAGCTTCTCTACGATTCATTTATTGAAGAACCTGGATATTTTCAATTTGCCACAGCAATAATAACAAATGATCTTGAGGAAATACAAAAGTTCCTTGATGCATCGGTTGATCAAAGCTGTGAGGGTTTAATCATCAAAACACTGAACCGCGATGCTACTTATGAGCCTTCCAAGAGGTCGCTTAACTGGCTAAAACTGAAGAAGGATTACATAGACAACATAGGGGATTCACTTGATCTGGTACCAATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGTGTCTATGGTGCATTTCTCCTTGCCTGTTATGATAATGACAATGAAGAATTTCAAAGCATTTGTAAGATAGGAACTGGGTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATTCCTGAACCAAAGTCATATTATCGGTATGGAGATACAATCAATCCAGATGTTTGGTTTGAGCCTACTGAGGTTTGGGAGGTTAAAGCAGCAGATTTGACTATTAGCCCAGTTCATCGTGCAGGAGTTGGCATTGTGGATTCAGACAAGGGAATTTCTCTCCGATTTCCACGTCTTGTTCGTGTGAGGAAAGACAAAAATCCTGAGGAAGCCTCATCATCTGAGCAGGTTGCCGACATGTATAATGCTCAGAAACACAACCACCAAAACAATCAAGATGACAATGAAGACGACTAA 2289 43.03 MSSRPSAFDALMSGARAAAKKKPVNSSPKKRKALDSLDPPPKPSSSLALESTPAVESQCGSSIANLDNHGGTHLVKSEDAADLEETKLRQDNGGSVGPKNGPFANKTCASSVQERTAKLKSSIPELKKKAKDFNSKNVACWKEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTITKVFDTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEKHSTPPPNIQSPLEEASKIVKQVYSILPVYDKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGMEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVARIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVALSDIKVEVCVFAFDLLYLDGQPLIQRELNVRRELLYDSFIEEPGYFQFATAIITNDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSDKGISLRFPRLVRVRKDKNPEEASSSEQVADMYNAQKHNHQNNQDDNEDD 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34957724 34967833 - CaPI482276_02g022300.1 Cam02g2230 121972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2230 762 FunFam DNA ligase 390 596 - -
Cam02g2230 762 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 382 600 - -
Cam02g2230 762 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 414 422 IPR016059 GO:0003909(InterPro)
Cam02g2230 762 Gene3D DNA ligase/mRNA capping enzyme 419 544 - -
Cam02g2230 762 MobiDBLite consensus disorder prediction 728 762 - -
Cam02g2230 762 MobiDBLite consensus disorder prediction 737 752 - -
Cam02g2230 762 CDD Adenylation_DNA_ligase_I_Euk 379 597 - -
Cam02g2230 762 MobiDBLite consensus disorder prediction 45 68 - -
Cam02g2230 762 SUPERFAMILY Nucleic acid-binding proteins 602 748 IPR012340 -
Cam02g2230 762 MobiDBLite consensus disorder prediction 1 73 - -
Cam02g2230 762 Pfam ATP dependent DNA ligase C terminal region 619 730 IPR012309 GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cam02g2230 762 CDD OBF_DNA_ligase_I 602 747 - -
Cam02g2230 762 Gene3D - 599 761 IPR012340 -
Cam02g2230 762 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 120 759 IPR050191 GO:0003910(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006266(PANTHER)|GO:0006273(PANTHER)
Cam02g2230 762 FunFam DNA ligase 125 392 - -
Cam02g2230 762 Gene3D - 400 598 - -
Cam02g2230 762 ProSitePatterns ATP-dependent DNA ligase signature 2. 568 594 IPR016059 GO:0003909(InterPro)
Cam02g2230 762 ProSiteProfiles ATP-dependent DNA ligase family profile. 496 632 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cam02g2230 762 FunFam DNA ligase 599 758 - -
Cam02g2230 762 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 130 381 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cam02g2230 762 Pfam DNA ligase N terminus 148 323 IPR012308 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cam02g2230 762 Gene3D - 125 392 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cam02g2230 762 NCBIfam ATP-dependent DNA ligase 206 745 IPR000977 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0071897(InterPro)
Cam02g2230 762 Pfam ATP dependent DNA ligase domain 390 594 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2230 K10747 - - csv:101213447 1396.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2230 Cam-Chr2:34957724 Cam07g1669 Cam-Chr7:31270694 2.30E-138 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1100 . . . Bda09g01436 . . . . . . . . . . . . . . . . . . . . Cla02g02101 Cam02g2230 Cec02g2268 Cco02g2308 Clacu02g2212 Cmu02g2147 Cre02g2464 . . . . . Csa06g01233 Chy11g00843 . Blo08g00019 . . . Bpe08g00178 . Bma07g00168 . Sed05g2803 . Cmo20g00553 . Cma20g00522 . Car20g00461 Cpe16g00505 . Bhi10g00144 Tan05g0202 Cmetu11g1276 . Hepe08g0926 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g0007 . 105 657 Core DNA Replication Machinery Family AT4G14700 66.7 1.4e-213 740.0
Cam08g0007 . 105 667 Core DNA Replication Machinery Family AT4G12620 66.7 1.2e-220 763.5
Cam08g2047 . 2 362 Core DNA Replication Machinery Family AT2G37560 65.4 6.0e-142 500.7
Cam07g0479 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.3 6.6e-151 530.8
Cam06g0369 . 3 531 Core DNA Replication Machinery Family AT4G29910 58.0 1.5e-171 599.7
Cam11g0931 . 1 254 Core DNA Replication Machinery Family AT1G26840 68.5 8.0e-92 334.0
Cam09g2299 . 68 864 Core DNA Replication Machinery Family AT1G79150 59.6 6.7e-248 854.0
Cam10g1373 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.6 0.0e+00 1353.6
Cam01g2506 . 62 636 Core DNA Replication Machinery Family AT5G46280 81.0 8.0e-269 922.9
Cam02g0506 . 1 845 Core DNA Replication Machinery Family AT2G16440 76.2 0.0e+00 1153.7
Cam11g0371 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.3 0.0e+00 1113.2
Cam01g2656 . 7 800 Core DNA Replication Machinery Family AT5G44635 73.4 0.0e+00 1163.3
Cam09g0512 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cam02g2032 . 55 512 Core DNA Replication Machinery Family AT2G29680 61.1 1.5e-157 553.1
Cam02g2032 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.6 4.3e-143 505.0
Cam09g0867 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 3.3e-257 884.4
Cam10g2023 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.5 0.0e+00 1081.2
Cam09g1617 . 1 424 Core DNA Replication Machinery Family AT2G14050 80.8 9.9e-199 690.3
Cam02g1242 . 1929 2339 Core DNA Replication Machinery Family AT2G20980 56.4 1.4e-118 423.3
Cam11g1620 . 7 960 Core DNA Replication Machinery Family AT1G77320 50.3 9.5e-257 883.6
Cam09g0265 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.0e-72 270.0
Cam11g0646 . 664 831 Core DNA Replication Machinery Family AT1G19080 69.0 2.7e-64 241.9
Cam11g0646 . 664 831 Core DNA Replication Machinery Family AT3G55490 69.0 2.7e-64 241.9
Cam05g0170 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.0 1.7e-50 196.1
Cam02g1288 . 1 1538 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1752.3
Cam04g1197 . 166 783 Core DNA Replication Machinery Family AT1G67630 59.6 2.3e-205 712.2
Cam06g0017 . 1 444 Core DNA Replication Machinery Family AT1G67320 64.5 1.4e-181 632.9
Cam08g0150 . 136 579 Core DNA Replication Machinery Family AT5G41880 65.0 9.7e-177 616.7
Cam01g1553 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1797.7
Cam10g1715 . 1 419 Core DNA Replication Machinery Family AT2G42120 76.1 6.3e-197 683.7
Cam06g0017 . 1 444 Core DNA Replication Machinery Family AT1G67320 64.5 1.4e-181 632.9
Cam01g0555 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.8 7.1e-37 150.2
Cam02g2276 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.6 0.0e+00 2982.6
Cam09g2092 . 68 2104 Core DNA Replication Machinery Family AT1G08260 68.0 0.0e+00 2787.7
Cam02g2276 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.2 0.0e+00 2948.3
Cam09g2092 . 90 2215 Core DNA Replication Machinery Family AT2G27120 65.1 0.0e+00 2758.8
Cam04g1308 . 1 258 Core DNA Replication Machinery Family AT5G22110 77.9 7.5e-122 434.5
Cam04g1307 . 7 218 Core DNA Replication Machinery Family AT5G22110 59.6 4.5e-58 222.6
Cam02g2330 . 50 974 Core DNA Replication Machinery Family AT5G22010 63.2 1.6e-306 1048.9
Cam10g0345 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.3 2.8e-173 604.7
Cam04g0473 . 88 441 Core DNA Replication Machinery Family AT5G27740 85.3 1.1e-178 622.9
Cam11g1618 . 19 337 Core DNA Replication Machinery Family AT1G21690 81.6 2.1e-144 508.8
Cam08g1021 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.8 1.5e-154 542.7
Cam11g0164 . 26 617 Core DNA Replication Machinery Family AT2G06510 68.6 9.7e-252 866.3
Cam10g0103 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.4 9.8e-196 680.2
Cam06g1696 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.3 5.7e-249 857.1
Cam10g0103 . 10 811 Core DNA Replication Machinery Family AT5G45400 50.3 2.3e-227 785.8
Cam06g1696 . 1 618 Core DNA Replication Machinery Family AT5G61000 66.1 2.7e-241 831.6
Cam10g0103 . 5 797 Core DNA Replication Machinery Family AT4G19130 53.3 3.7e-224 775.0
Cam03g1804 . 1 404 Core DNA Replication Machinery Family AT5G26680 82.5 1.0e-188 656.4
Cam05g0314 . 30 608 Core DNA Replication Machinery Family AT1G08840 62.1 3.7e-203 705.7
Cam07g1587 . 1 297 Core DNA Replication Machinery Family AT2G25100 66.7 5.0e-115 411.0
Cam02g2230 . 2 762 Core DNA Replication Machinery Family AT1G08130 69.2 1.1e-297 1019.2
Cam02g2230 . 162 762 Core DNA Replication Machinery Family AT1G49250 69.1 2.5e-242 835.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009502 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32