Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2233 ATGGAGCAAATTGGGAGGCATTTAATGACGAACATAAGCGATCAATTTGAGCTCCAAGATTTCATCCATGGCGACAACTTGGATCAATATGTGAATCTGATTCGTGGAGGGAACGAAAATTCGATATTCAATAACTTCGATCTTGATTTCATGAACGGTTGCTTGGTGGAGAATCGTTTGGATCCAAGCCCTGAATTCATTGTAGATTCGAATATGTTGATGAATAATTCTGATCCCAATTCTCTGTTTAGTACATTGGAGAGTTTCAATGGCATCATGAAAGAAGTTGAAAATGAAGATGAAGATGAAGATGACACTTCTGTAGAGAATTCTTCTTTCACAACCTCAAAGAAACCTAAGGTCGATCGATCAAGAACTTTGATTTCTGAACGAAGGAGAAGAGGAAGAATGAAGGAAAAGCTTTATGCATTGCGTTCATTGGTTCCAAATATAACCAAGATGGACAAGGCTTCTATTGTTGGGGATGCAGTCTTATATGTGAAAGAGCTACAAATGCAAGCCAAGAAGCTCAAATCAGAGATATCAGTTTTGGAATCTTCAATCAACCAAACACAAATTATTGATAAAGATCAAAAGCAAAAGAAGATTATTCAAACTTCACATCCTGACCAATTCCTCCCCATCAAAATAATTCAGCTGGATGTGTTTCAAGTGGAGGAAAGAGGATTTTATCTGAGGTTAGTTTGCAAGATGGGTGAAAGAGTAGCTATGTCTCTTTACAAAGTTCTTGAATCCCTCACCAGCTTCGTTATTCAAAGCTCTAACTTGGCCTCTGCTTCAGATAGATTCATTCTCACCGCTACAATTAATGTGCGAGATTGTGAGGTGGACATGAACTTGCCAAATTTGAAGCTTTGGCTAACTGGGGCACTTCTTAACCATGGATTTGAGTTTTAA 918 38.13 MEQIGRHLMTNISDQFELQDFIHGDNLDQYVNLIRGGNENSIFNNFDLDFMNGCLVENRLDPSPEFIVDSNMLMNNSDPNSLFSTLESFNGIMKEVENEDEDEDDTSVENSSFTTSKKPKVDRSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVKELQMQAKKLKSEISVLESSINQTQIIDKDQKQKKIIQTSHPDQFLPIKIIQLDVFQVEERGFYLRLVCKMGERVAMSLYKVLESLTSFVIQSSNLASASDRFILTATINVRDCEVDMNLPNLKLWLTGALLNHGFEF 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34990583 34992683 + CaPI482276_02g022330.1 Cam02g2233 121975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2233 305 Coils Coil 167 187 - -
Cam02g2233 305 Gene3D - 119 197 IPR036638 GO:0046983(InterPro)
Cam02g2233 305 SMART finulus 127 176 IPR011598 GO:0046983(InterPro)
Cam02g2233 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 170 IPR011598 GO:0046983(InterPro)
Cam02g2233 305 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 98 303 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cam02g2233 305 MobiDBLite consensus disorder prediction 97 125 - -
Cam02g2233 305 Pfam Helix-loop-helix DNA-binding domain 126 171 IPR011598 GO:0046983(InterPro)
Cam02g2233 305 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 117 187 - -
Cam02g2233 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 189 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2233 Cam-Chr2:34990583 Cam06g1512 Cam-Chr6:26595007 3.40E-16 dispersed
Cam02g2233 Cam-Chr2:34990583 Cam11g1195 Cam-Chr11:23588468 1.50E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51585 PF00010 HLH 2.50E-09 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2233 K26214 - csv:101213681 491.115