Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2288 ATGGGGAGCCAAAGAGTTGAAGAAACTGGTCCTTCATCCCACTATCATCATCACCTTCCATATAATTCACTTCTTTATGGAATCAACAACAATAATCTTTCCTCCACTTTGATCAATCACGATGGACAATCTTTTGATTTTGGAGAATTGGAACAAGCAATTGTGCTACAAGGACTCGGACCCAAAAACAAACTCGATCATCACGAACCTAAACAAAGCTTTTTCTCAGGCAAGCCTGCAGCAACTCTGGAAATGTTCCCTTCTTGGCCAATCAAACACCAACAAACTTCAAGAGGAATTAGTTTGAGAAGAAGAGAAGAGAGCAGTGATGAGTCAGGAGCAGCTGTGAACACTCAAACAATAAACAAATCTAATAATCAAGAAGGGCATTTGGAATTGGAAATAGAAAAAGAAGAATCTGAGATGAGTAAAAAGGGTTGTTGTTCATCTTCTTCTTCAGGTCAAGATCAGAGCTTTATTCAAAAGCATCTACAGCAGATTCAACCTGAAATGATACTCAGTGATATTTCAACAACTGCACTTTCATCTCAACATCAATCCCTTCAACAAAAGAGAAAAGGATGTGGTTCCATTTCAACATCACAGAAACAACTTGACGCTAAGACATTGAGACGTTTAGCTCAGAACAGAGAGGCTGCGAGGAAGAGTCGACTAAGGAAAAAGGCTTACGTACAGCAACTCGAGAGCAGTAGAATCAAGCTTACGCAGCTTGAGCAGGACCTTCAACGGGCACGATCTCAGGGTTTGTTTTTAGGTGCCGGCGGTACTGGCGGCGGCATTGTCAGCCCCGCTAGTGCAATTTTCGATATGGAATATGTAAGGTGGTTGGAAGAGGACCATCGACATACAGTGGAGCTGCGTGGGGGATTAGAGGCACATCTGCCTGACGTGGATTTGAGAGTGAGAGTAGATGCATGCATTTGCCATTACAACGAAATTTTTCGACTCAAAGGAGAGGCTGCTAAGTCCGACATCTTCCATCTCATCACCGGAATCTGGATGTCTCCGGCGGAGCGTTGTTTCCTCTGGATCGGTGGATTTCGACCCTCCGATCTCATCAAGATGTTAATGTCACAATTGGATCCAATAACAGAACAACAAGTGATGGAGATTTACAAGCTACAACATTCGTCACAACAAGCTGAAGATGCTTTATCTCAAGGACTTGATCAGCTCCATCGGTCTTTGACCGACATCGTCGCCGGCGGTCCGATCATCGACGGCATCAACCACATGGTTTTGGCCATGGACAAGCTCTCTAGTCTCCAAGGCTTTCTCCATCAGGCAGATATTTTAAGACAACAAACGCTTCATCGACTACGTAGGATACTCACGGTTCGACAAGCGGCCAAATGTTTTCTAATCATTGGTGAATATTACAGTAGATTACGAGCTCTAAGCTCCCTATGGTCCTCTCGTCCAAAGGAGGGTGAAGATAATTCAAGCCAAACAAGTTTGCATCAACAAGTCCATATGGTTCAACCCTCGCACCATCACTTCTCAAGCTTCTAA 1533 43.9 MGSQRVEETGPSSHYHHHLPYNSLLYGINNNNLSSTLINHDGQSFDFGELEQAIVLQGLGPKNKLDHHEPKQSFFSGKPAATLEMFPSWPIKHQQTSRGISLRRREESSDESGAAVNTQTINKSNNQEGHLELEIEKEESEMSKKGCCSSSSSGQDQSFIQKHLQQIQPEMILSDISTTALSSQHQSLQQKRKGCGSISTSQKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQRARSQGLFLGAGGTGGGIVSPASAIFDMEYVRWLEEDHRHTVELRGGLEAHLPDVDLRVRVDACICHYNEIFRLKGEAAKSDIFHLITGIWMSPAERCFLWIGGFRPSDLIKMLMSQLDPITEQQVMEIYKLQHSSQQAEDALSQGLDQLHRSLTDIVAGGPIIDGINHMVLAMDKLSSLQGFLHQADILRQQTLHRLRRILTVRQAAKCFLIIGEYYSRLRALSSLWSSRPKEGEDNSSQTSLHQQVHMVQPSHHHFSSF 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35500058 35507309 + CaPI482276_02g022880.1 Cam02g2288 122030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2288 510 Pfam Seed dormancy control 291 365 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cam02g2288 510 FunFam BZIP family transcription factor 207 256 - -
Cam02g2288 510 SUPERFAMILY Leucine zipper domain 208 251 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2288 510 PANTHER TRANSCRIPTION FACTOR TGA9 144 483 - -
Cam02g2288 510 Pfam bZIP transcription factor 207 249 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2288 510 Gene3D - 207 256 - -
Cam02g2288 510 ProSiteProfiles DOG1 domain profile. 272 480 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cam02g2288 510 MobiDBLite consensus disorder prediction 112 128 - -
Cam02g2288 510 SMART brlzneu 204 281 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2288 510 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 206 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2288 510 Coils Coil 121 141 - -
Cam02g2288 510 MobiDBLite consensus disorder prediction 481 510 - -
Cam02g2288 510 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 211 226 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2288 510 Coils Coil 227 254 - -
Cam02g2288 510 MobiDBLite consensus disorder prediction 94 129 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1273 Cam-Chr1:22297137 Cam02g2288 Cam-Chr2:35500058 7.20E-146 dispersed
Cam02g2288 Cam-Chr2:35500058 Cam10g1699 Cam-Chr10:30999001 1.70E-92 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51590 PF14144 DOG1 1.70E-27 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2288 K14431 - csv:101223216 676.396