Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2314 ATGTCGGGTTCTCGAGCTCCTAACTCCTCTGGACACCTGCCTGAGCAGATCATGCACTCTCTTAAGCGCCAACTCCCTTTTTCTTCTATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTTGCCCCGGACCCTCGACTTTCCGATCAAGAACCTGACGCCATCGTAGTCAAATCTCCACAATTGAAGAGGAAGAGTGAGGTAGCAGATTATGAAGCTGAGTCAACTGATAGAGCTGCCGGTCCTAGATTTACTGAGGTTGTTAACAGTCCCCATCAAACACCTGTATCTGTCAAAGGAGGAAAGGGAAGCAAATCAAGGCTTACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTCTACAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTCATTAATCTGATTAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTCGAGGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGTCAGGGGATGTCGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTACCGTGGAGGAGCGTGGAATAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTACTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTTAGTCAGTTTGAAGCGAAGTTTGAGGAGATAAATGCTGTGGAAGTGCCCCCAAGCTTGCCGTCAAGTTCAGGATTGAATGAAGCACCTGCAACAACGATAGTAACAGAGGATACCAGGGGAAAGGAAGTTGAAACACGGGAGCAAGATGTACACAGAATGTGCTCCGATCTAAACGCTTCACAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCTGTCGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATCACAGACATGTGGAGAACTGAACCTGGCGTTGAGTGGAATGAATTGGGTACATTTCATGAAGATTATAGTATTGGCAATGTCAGCTCACCCCAAACCCAGACTCCACTTCCCAATGATGCACCTGATATGCCTTCTACCAATCCTTCTAGCAGCTGA 1389 45.21 MSGSRAPNSSGHLPEQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPRLSDQEPDAIVVKSPQLKRKSEVADYEAESTDRAAGPRFTEVVNSPHQTPVSVKGGKGSKSRLTKCSRSGPQTPMSNVGSPSTNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLTVEERGIDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEAKFEEINAVEVPPSLPSSSGLNEAPATTIVTEDTRGKEVETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPGVEWNELGTFHEDYSIGNVSSPQTQTPLPNDAPDMPSTNPSSS 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35674984 35681408 - CaPI482276_02g023140.1 Cam02g2314 122056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2314 462 CDD E2F_DD 216 322 IPR032198 GO:0046983(InterPro)
Cam02g2314 462 MobiDBLite consensus disorder prediction 90 135 - -
Cam02g2314 462 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cam02g2314 462 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cam02g2314 462 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
Cam02g2314 462 MobiDBLite consensus disorder prediction 109 135 - -
Cam02g2314 462 Gene3D - 212 322 - -
Cam02g2314 462 Coils Coil 225 252 - -
Cam02g2314 462 MobiDBLite consensus disorder prediction 1 15 - -
Cam02g2314 462 SUPERFAMILY E2F-DP heterodimerization region 217 322 IPR037241 -
Cam02g2314 462 Gene3D - 134 207 IPR036388 -
Cam02g2314 462 MobiDBLite consensus disorder prediction 434 462 - -
Cam02g2314 462 Pfam E2F transcription factor CC-MB domain 221 321 IPR032198 GO:0046983(InterPro)
Cam02g2314 462 MobiDBLite consensus disorder prediction 1 59 - -
Cam02g2314 462 FunFam E2F transcription factor 1 134 207 - -
Cam02g2314 462 PANTHER TRANSCRIPTION FACTOR E2F 31 417 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cam02g2314 462 Coils Coil 156 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1461 Cam-Chr1:28185939 Cam02g2314 Cam-Chr2:35674984 4.60E-09 dispersed
Cam02g2314 Cam-Chr2:35674984 Cam08g1910 Cam-Chr8:25038891 2.80E-62 dispersed
Cam02g2314 Cam-Chr2:35674984 Cam04g1063 Cam-Chr4:24745653 1.10E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51595 PF16421 E2F_CC-MB 1.40E-34 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2314 K06620 - csv:101219318 897.886