Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2320 ATGGCGACGTACTTTCACGGTGGTTCAGAAATCCAAGCGAGTTCTGACGGAATTCATACTCTTTACCTTATGAACCCAAATTACGTACCTTACTCTGACACCCACTCTCAAACGCCTCCCAATATGCTCTTTCTCAACTCTTCTTCAACTCACGCGCTTAACCCTTCAACTCTTCCTCACGCGCCGCCTTCCAACAACCACTTCGTCGGAATTCCCCTCCCGACCACCGACAATCCTCGTCCATCCTACCACGAAATCTCAACCCTCCATCCGATGCCACCTCACCGCCTCCACTACAATCTATGGGCTCCTATGGACCAACAACCCCATCACGGAATTTCCGGCGATTCCGCCGATTTGACCTTCCGCCGCCCCACCACACAACAAGGTTTGTCCTTAAGCCTCTCCTCCCAACAATCGCTTTACCGGACACTCTCGGCCGAGCAGGAGATTCAAGGCGGCGGCGGCGGTGCTCCAAGTGGGGAGGAAATTCGGGTGTCGGGAAATTCACCGACGTCGGTGTCGGTGGTGTCGAGTGGAATAACGGGCGTTCAAAGCGTGATATTGGGGTCTAAGTACTTGAAAGCGGCTCAAGAACTTTTGGATGAAGTGGTTCATGTTGGCAAAGGAAATTTTAAATCCGACAAAGGGGATGGGACAAAGGACAAGATGAAGATGAAGAAAGAATCAATGGCTACGATTGGTGGAGACCCTTCCGCCTCCGTCGGCGGTGGTGAAAGTACTTCCAAGCCTGTTGCTGAGCTCAGCACTGCTCAAAGACAGGACCTTCAGATGAAAAAAGCTAAGCTCATTGGCATGCTTGATGAGGTGGAGCAGAAGTACAGACAATATCATCAACAAATGCAAGGAGTGGTGAGTTGTTTTGAGCAGGCAGCAGGTTTGGGGTCAGCCAAATCTTACGCTTCACTCGCACTTGAAACAATTTCAAAGCAATTCCGGTGCTTAAAAGATGCAATTTGTGCACAAATAAAAGCGACAGGGAAAAGCTTAGGAGAAGAAGAAAATTGGTTGGGTTCAAAAATTGAAGGGTCTTCAAGATTGAGATACGTTGATCATCATTTAAGGCAGCAAAGAGCTTTGCAACAATTGGGAATGATTCAACACAATACTTGGAGACCACAAAGAGGTTTGCCTGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAGCATTTCCTTCATCCCTATCCCAAAGATTCAGACAAGATTATTCTCGCCAAACAAACCGGACTCACAAGGAGCCAAGTATCGAATTGGTTTATAAATGCAAGAGTTCGTCTATGGAAGCCAATGGTTGAAGAAATGTACTTGGAGGAAATCAAAGAGCAAGAACAAAACGGGGATTCCCAAGACATGATTAGAGGAGGGGATCATCATCATCATCATCATCAAAGCAATAACAACAATAATAATAGTAATAATGATCCACAATATTCCAAGACAGAAAATTTGATGAACAACAACAACAACAACCCTTCCCATTCTTCAATCTCATCATCCTCAATGTTAGGAATAGGATCAACGACGGGCGGCTTCAACCTCGTACGACCGTCCTTCGACAATAACATTCTCTCAAGTCCCAAAAAACCAAGGACCACCACCAGTAACAGTACAGCCACAATCAACAACAACAACCTGCCCGAAACCCCATCCTCAAAATCCATGCTTTTAAGAGACAATATTGTTCATGATCATCATAGGGGTAGTTTTGGTAATTCCAATACATACCCGGTTGGTGAAATTGGCTCAACCTTCAATTCTGAGCTTTTAACACCAAGATTTCATGCAAATGGAGTCTCTCTCACTCTTGCCCTTCCCCATAATAGTAATTCAGATCATCTCTCTCTTTCAGCCAACCAACCAAATTACCACCACCTATCCTCCAACCCAAATCTTCACTTGGGCAGATCAAGGCTTGATATCACCAATAATCATCATCCCGGACCACCCAATTTCTCCGACGTCAATCCCGCTGCCCCCCCACCACCTCATTCCGCTTACGACCACGTTGAAATGCAAACCACCAAAAGGTTCGCCGCCCAATTGTTGCCGGATTTTGTTGCCTGA 2091 46.25 MATYFHGGSEIQASSDGIHTLYLMNPNYVPYSDTHSQTPPNMLFLNSSSTHALNPSTLPHAPPSNNHFVGIPLPTTDNPRPSYHEISTLHPMPPHRLHYNLWAPMDQQPHHGISGDSADLTFRRPTTQQGLSLSLSSQQSLYRTLSAEQEIQGGGGGAPSGEEIRVSGNSPTSVSVVSSGITGVQSVILGSKYLKAAQELLDEVVHVGKGNFKSDKGDGTKDKMKMKKESMATIGGDPSASVGGGESTSKPVAELSTAQRQDLQMKKAKLIGMLDEVEQKYRQYHQQMQGVVSCFEQAAGLGSAKSYASLALETISKQFRCLKDAICAQIKATGKSLGEEENWLGSKIEGSSRLRYVDHHLRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKIILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEQEQNGDSQDMIRGGDHHHHHHQSNNNNNNSNNDPQYSKTENLMNNNNNNPSHSSISSSSMLGIGSTTGGFNLVRPSFDNNILSSPKKPRTTTSNSTATINNNNLPETPSSKSMLLRDNIVHDHHRGSFGNSNTYPVGEIGSTFNSELLTPRFHANGVSLTLALPHNSNSDHLSLSANQPNYHHLSSNPNLHLGRSRLDITNNHHPGPPNFSDVNPAAPPPPHSAYDHVEMQTTKRFAAQLLPDFVA 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35734900 35738298 + CaPI482276_02g023200.1 Cam02g2320 122062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2320 696 Gene3D - 381 459 - -
Cam02g2320 696 FunFam BEL1-like homeodomain protein 9 381 443 - -
Cam02g2320 696 MobiDBLite consensus disorder prediction 474 510 - -
Cam02g2320 696 MobiDBLite consensus disorder prediction 528 560 - -
Cam02g2320 696 MobiDBLite consensus disorder prediction 450 472 - -
Cam02g2320 696 SUPERFAMILY Homeodomain-like 379 444 IPR009057 -
Cam02g2320 696 Pfam Associated with HOX 187 326 IPR006563 -
Cam02g2320 696 ProSiteProfiles 'Homeobox' domain profile. 375 438 IPR001356 GO:0003677(InterPro)
Cam02g2320 696 MobiDBLite consensus disorder prediction 450 510 - -
Cam02g2320 696 Coils Coil 260 287 - -
Cam02g2320 696 Pfam Homeobox KN domain 395 434 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam02g2320 696 MobiDBLite consensus disorder prediction 149 172 - -
Cam02g2320 696 MobiDBLite consensus disorder prediction 211 260 - -
Cam02g2320 696 MobiDBLite consensus disorder prediction 648 667 - -
Cam02g2320 696 SMART HOX_1 378 442 IPR001356 GO:0003677(InterPro)
Cam02g2320 696 CDD homeodomain 378 439 IPR001356 GO:0003677(InterPro)
Cam02g2320 696 MobiDBLite consensus disorder prediction 242 260 - -
Cam02g2320 696 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 138 492 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam02g2320 696 MobiDBLite consensus disorder prediction 211 230 - -
Cam02g2320 696 SMART prehox3 182 328 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2320 Cam-Chr2:35734900 Cam11g0432 Cam-Chr11:5734054 1.20E-80 dispersed
Cam01g1666 Cam-Chr1:30258509 Cam02g2320 Cam-Chr2:35734900 1.00E-68 transposed
Cam02g1346 Cam-Chr2:26108584 Cam02g2320 Cam-Chr2:35734900 2.00E-69 transposed
Cam10g1793 Cam-Chr10:32060581 Cam02g2320 Cam-Chr2:35734900 6.10E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51596 PF07526 POX 2.80E-46 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2320 - - - 0.0