Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2328 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACACTTGTGACTGTGAGATGTGGCCATTGTTCAAATCTGTTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAATGCTGGGGATTCAAGTAAGGACAGAGCTTCTTCTTCTTCTTCTTCTTCTTCTAAATGCACTAAAATTGGCTCTCTTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAGCGAGTTCCTTCGGCGTATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAAGAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCATATTCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAACAAAATAA 525 42.67 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35847031 35853014 - CaPI482276_02g023280.1 Cam02g2328 122070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2328 174 SUPERFAMILY HMG-box 110 158 IPR036910 -
Cam02g2328 174 Gene3D High mobility group box domain 110 161 IPR036910 -
Cam02g2328 174 PANTHER PROTEIN YABBY 6-RELATED 6 172 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Cam02g2328 174 FunFam axial regulator YABBY 5-like 103 161 - -
Cam02g2328 174 MobiDBLite consensus disorder prediction 58 96 - -
Cam02g2328 174 CDD HMG-box_SF 119 155 - -
Cam02g2328 174 MobiDBLite consensus disorder prediction 58 121 - -
Cam02g2328 174 Pfam YABBY protein 7 165 IPR006780 GO:0007275(InterPro)
Cam02g2328 174 MobiDBLite consensus disorder prediction 97 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0388 Cam-Chr1:4275557 Cam02g2328 Cam-Chr2:35847031 5.20E-44 dispersed
Cam02g2328 Cam-Chr2:35847031 Cam06g1215 Cam-Chr6:23391851 1.10E-46 dispersed
Cam02g2328 Cam-Chr2:35847031 Cam11g0240 Cam-Chr11:3903400 1.10E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51597 PF04690 YABBY 3.50E-75 CL0114 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2328 K25796 - csv:101222154 324.324