Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2330 ATGTCGATTCGAACTTCTCCACATTTCCGAAAGCGAGCGGTGGAAATTTCTCGCGAGCCCAGTCGAACGGTGAACTTGACAGTGGAGTGGCGTTTCTTGCCTTTTGCACTCCGCCTTGCATTCTACAATGGTGAGTTAGGGTTTTCGGCGGATATTAGAAAATGGTTCATGAAAGCACACGATAAAGAGAACGGCAGTGGATCAAAGAAAGCAAAACCCGCTCCAAGCAACTTAGAGAAATCCGCTTCAGCTGAACTACAGTCCGGGAAAACAGGGCCGAGTGGTGGAGAAAGTACTGGCAGACGGATAACTAGCAAGTATTTTGCATCAGAAAAGCATAAGGACAATTATACAAAAGAAACAGAGGAACCCCCGATCAAACAAAAGTCTCCACAGGATCCTAAGGAATCTCCAGCCAAAAGAAAGTTTCAAATGGATAATGAGGGATCACCAAAAGCTTCACCTTTAAAAAAATCAAACAAAATTGATGACAATGACGATGATGCTGTTTTTTCTAGTTCTAGAAAGAACATGTCTGAAGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCTTTAGAAATTGAAGCGAGTGATGATGAGGAAACTAAGGGCACCGTTTCTTCTCTGAAGCCTAGTGGAAGAGGTAGGGGAGGAAGGGGTTCATCTGCTGCAACCGGTGGTGGTAGAGGCAGAGGTGGTGGGCGAGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTTCAGACTGCTTAGCCGGTTTAACTTTTGTAATTAGTGGAACCCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCACGGTGGCCGAGTAACTGGATCTGTCAGCAAAAAAACAAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCAAAAGAGCTGGGAACCGGTTTTCTCACTGAGGATGGCTTATTTGACATGATCCGTGCATCAGGCCAAAAAGCTCCTCCAAGGCAAGATCCTAAAAAATCTGTGGTTAAGTCCTCTGTGGAATCTCCGACAGAGAAAAATTTCCAGAAAGTACAAGCAAAGCCCCGCAAGGATTTGACTGCTAGTGCTTCACCTGCTAAGCAAAAAAGCCGAACAGCTGAATTCTCTAACCTAACATGGACCGAAAAATATAGGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCGCTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACAAAAACTTCATAGATGTTGGAAGCAAAAAGAAGGTTAAGAAGCTCAATGATTCTGGTGCCAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCCGCTAAGTTGGTTAGCCAGATGCTTGGTTTTGAGGCTATAGAGGTAAATGCCAGCGACAATCGAGGTAAATCAGATGCCAAAATTCAAAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCACTGCACTTCAGAATGGATCAGCCAAAACATCCCAAAACTGTGTTGATCATGGATGAGGTAGATGGAATGTCTGCGGGAGATAGGGGTGGAGTTGCCGATCTGATTGCAAGCATTAAAATGTCCAAAATTCCAATTATCTGCATCTGTAATGACCGTTACAGCCAGAAGCTGAAAAGCCTTGTGAACTACTGTCTTATTCTCAGCTTTAGGAAACCTACAAAACAACAGATGGCAAAAAGATTGATTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGATATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCTATGTCAGTTATTAAGTATGATGATATTCGCCAACGGCTTCTGGGCAGTATGAAAGATGAAGACATCTCACCATTCACTGCTGTTGATAAGCTGTTTGGTTTCAATTCTGGGAAGTTAAGGATGGACGAAAGGATTGACCTCAGCATGAGTGATCTTGATTTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTACAGGCCAAGCGCTGTTAGTAAGGATGACAATGGGATCAAACGGATGGAATTGATTGCCCGTACAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGTTGTATTGCTTCTTGTGTAATCCCAGCTTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGATTTGGTGCATGGCTGGGAAAAAATTCAACGTTTGGAAAAAATATGAGGCTTTTGGAGGATTTGCACGTTCACATTCTTGCTTCTCGCGAATCCTGCTCAGGGAGGGAACACCTAAGAGTTGAGAACCTTACTCTATTTCTAAAGAGGTTGACTGAGCCACTACACACGCTGCCTAAGGATGAAGCTGTTAAAATGGTGGTCGAATTTATGAGTCTATATTCAATCAGTCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGTGTAGCCCCCGCAGTCAAAGCTGCTCTGACAAAGGCATACAAAGAAGTAAGCAAGACACACATGGTGCGGGCCGCAGATCTTATTACGCTTCCTGGAATGAAAAAAGCCCCTAAGAAGCGAATTGCAGCGATTCTAGAACCAACTGAGGATGCAGTTGAAGGTGCTGTTGGAGACACATTGGCAGAAAGTGACGACGAAAACTCTTTGGACAATGAGGATGCAGAAGACTCCACAAACGGTGAGAAGCTGCAATTGGAACTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAATTGGATTTGAAGGGTGTGGAAAATTCAAGTGCGACGAAATCTGGTGGCAGAGGACGAGGAGGTAGAAGTTCTCAGGCTTCAGAGAAGAAAGGTGGTCGAGGTTCAGAAATGAGACCAAGTCTTCGCCATGGAGCGGTTGACATTTGGGATGATGATTCACCCAACGGACGAGACTGGTTTTTGTAG 3120 43.24 MSIRTSPHFRKRAVEISREPSRTVNLTVEWRFLPFALRLAFYNGELGFSADIRKWFMKAHDKENGSGSKKAKPAPSNLEKSASAELQSGKTGPSGGESTGRRITSKYFASEKHKDNYTKETEEPPIKQKSPQDPKESPAKRKFQMDNEGSPKASPLKKSNKIDDNDDDAVFSSSRKNMSEVTPNKKLKSGSGKGITQKPLEIEASDDEETKGTVSSLKPSGRGRGGRGSSAATGGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGQKAPPRQDPKKSVVKSSVESPTEKNFQKVQAKPRKDLTASASPAKQKSRTAEFSNLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNKNFIDVGSKKKVKKLNDSGAKKAVLLCGGPGIGKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKIQKGIGGSNANSIKELISNESLHFRMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLLGSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSAVSKDDNGIKRMELIARTAESIADGDIINVQIRRHRQWQLSQSSCIASCVIPASLLHGQRETLEQGERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTLFLKRLTEPLHTLPKDEAVKMVVEFMSLYSISQEDFDTVLELSKFQGRKNPLDGVAPAVKAALTKAYKEVSKTHMVRAADLITLPGMKKAPKKRIAAILEPTEDAVEGAVGDTLAESDDENSLDNEDAEDSTNGEKLQLELQSLNKKGMQVQLDLKGVENSSATKSGGRGRGGRSSQASEKKGGRGSEMRPSLRHGAVDIWDDDSPNGRDWFL 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35870980 35883910 + CaPI482276_02g023300.1 Cam02g2330 122072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2330 1039 MobiDBLite consensus disorder prediction 347 399 - -
Cam02g2330 1039 SUPERFAMILY post-AAA+ oligomerization domain-like 663 808 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cam02g2330 1039 MobiDBLite consensus disorder prediction 250 265 - -
Cam02g2330 1039 SMART AAA_5 455 593 IPR003593 GO:0016887(InterPro)
Cam02g2330 1039 MobiDBLite consensus disorder prediction 940 954 - -
Cam02g2330 1039 MobiDBLite consensus disorder prediction 980 999 - -
Cam02g2330 1039 Pfam BRCA1 C Terminus (BRCT) domain 268 343 IPR001357 -
Cam02g2330 1039 MobiDBLite consensus disorder prediction 174 191 - -
Cam02g2330 1039 MobiDBLite consensus disorder prediction 80 105 - -
Cam02g2330 1039 MobiDBLite consensus disorder prediction 1001 1015 - -
Cam02g2330 1039 FunFam Replication factor C subunit 1 242 345 - -
Cam02g2330 1039 CDD HLD_clamp_RFC 592 650 IPR047854 -
Cam02g2330 1039 CDD AAA 444 592 - -
Cam02g2330 1039 Gene3D - 592 662 - -
Cam02g2330 1039 FunFam Replication factor C subunit 1 664 773 - -
Cam02g2330 1039 Gene3D - 403 591 IPR027417 -
Cam02g2330 1039 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 140 970 - GO:0003677(PANTHER)|GO:0005634(PANTHER)
Cam02g2330 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 403 652 IPR027417 -
Cam02g2330 1039 ProSiteProfiles BRCT domain profile. 266 344 IPR001357 -
Cam02g2330 1039 SUPERFAMILY BRCT domain 266 345 IPR036420 -
Cam02g2330 1039 FunFam Replication factor C subunit 1 592 663 - -
Cam02g2330 1039 SMART BRCT_7 268 346 IPR001357 -
Cam02g2330 1039 FunFam Replication factor C subunit 1 403 591 - -
Cam02g2330 1039 CDD BRCT_RFC1 266 344 - -
Cam02g2330 1039 Pfam Replication factor RFC1 C terminal domain 732 894 IPR013725 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)
Cam02g2330 1039 MobiDBLite consensus disorder prediction 157 173 - -
Cam02g2330 1039 Pfam ATPase family associated with various cellular activities (AAA) 459 571 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam02g2330 1039 MobiDBLite consensus disorder prediction 106 147 - -
Cam02g2330 1039 Gene3D BRCT domain 243 345 IPR036420 -
Cam02g2330 1039 PIRSF RFC1 48 995 IPR012178 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)
Cam02g2330 1039 MobiDBLite consensus disorder prediction 62 266 - -
Cam02g2330 1039 Gene3D - 664 774 - -
Cam02g2330 1039 MobiDBLite consensus disorder prediction 940 960 - -
Cam02g2330 1039 MobiDBLite consensus disorder prediction 1021 1039 - -
Cam02g2330 1039 MobiDBLite consensus disorder prediction 980 1039 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2330 Cam-Chr2:35870980 Cam05g0394 Cam-Chr5:3624363 2.40E-21 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2330 K10754 - csv:101204361 1662.89