Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2338 ATGAAATATTGCATTGATGCCGTCGGACTTACAAGATTGGTAATTTTCCTAGCAGCTTTTTCAGCCATCTTCGGCGCATCGCCGCCGGTTCCGACCGAAAAGTCGAAATTAGACAGCTGGTTTTCAGAAAATGTGAAGCCCTTCGCTGATCGTAAGGCGGAGCTTGATCCGGCGCTTGTGACTGCAGAAGAAAACGCCACCGTGGTTAAAGTAAGGACCGACGGAAGTGGAGATTTCAAGACAATCACCGAAGCCATTAACAGCGTGCCAGCTGGCAACACGAGACGTGTAGTGATTTGGATTGGAGAAGGAGTTTATAAAGAGAAGCTTAAGATTGATAGAAATAAGCCTTTCGTTACTCTTTATGGCTCTCCTAATAATATGCCTAAATTGACCTTTGATGGCGATGCTGCCAAATACGGCACCGTTTACAGTGCAACCTTGATTGTTGAGTCTGATTATTTCACCGCCGCCAATCTCATCATTGAGAATTCATCTCCAAGGCCAGATGGGAAAAGAAAAGGAGCACAAGCATTAGCAGCAAGACTATTAGGGACTAAAGCGGCAGTTTACAATTGCAAATTCTATGGATTTCAAGATACCCTTTGCGATGACGACGGTTTGCATCTCTACAAAGATTGCTTCATTCAAGGCACCGTCGACTTCATTTTCGGAAAGGGAACATCTCTTTATTTGAATAGTCAATTGGATGTGGTGGGAGACGGAGGATTGGGAGTGATCACAGCCCATTCAAGGGAACAAGAATCAGATGGAAGTGGATATTCGTTCGTTCATTGTAGCATTACGGGAACTGGCGGCAAAAACACTTATTTGGGAAGAGCTTGGATGCCCAGATCTAGGGTTGTCTTTGCCTACACTACAATGGCTGACATCATTCATTCCGAAGGCTGGAACGATATGAACCATGCCGGTTACGATGCCACGGTTTTGTTCGGAGAATATAAGTGTTCGGGACCGGGATCGGAGCCGAGCGGGCGCGTAAAATACAGCAAGCAATTGAGTGATGTAGAAGTGAAACCGTTCATTAGTCTTGGTTACGTGCAGAGCGAGAAGTGGCTGCTTCCTCCTCCCAATCCTCAAGCTTAA 1107 45.8 MKYCIDAVGLTRLVIFLAAFSAIFGASPPVPTEKSKLDSWFSENVKPFADRKAELDPALVTAEENATVVKVRTDGSGDFKTITEAINSVPAGNTRRVVIWIGEGVYKEKLKIDRNKPFVTLYGSPNNMPKLTFDGDAAKYGTVYSATLIVESDYFTAANLIIENSSPRPDGKRKGAQALAARLLGTKAAVYNCKFYGFQDTLCDDDGLHLYKDCFIQGTVDFIFGKGTSLYLNSQLDVVGDGGLGVITAHSREQESDGSGYSFVHCSITGTGGKNTYLGRAWMPRSRVVFAYTTMADIIHSEGWNDMNHAGYDATVLFGEYKCSGPGSEPSGRVKYSKQLSDVEVKPFISLGYVQSEKWLLPPPNPQA 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35954238 35956007 - CaPI482276_02g023380.1 Cam02g2338 122080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2338 368 Pfam Pectinesterase 69 354 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cam02g2338 368 Gene3D - 62 363 IPR012334 -
Cam02g2338 368 FunFam Pectinesterase 64 362 - -
Cam02g2338 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 44 360 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cam02g2338 368 SUPERFAMILY Pectin lyase-like 66 361 IPR011050 -
Cam02g2338 368 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2338 Cam-Chr2:35954238 Cam03g1502 Cam-Chr3:29957273 1.20E-108 dispersed
Cam02g2335 Cam-Chr2:35945025 Cam02g2338 Cam-Chr2:35954238 7.80E-217 proximal
Cam02g2338 Cam-Chr2:35954238 Cam02g2339 Cam-Chr2:35958965 7.80E-217 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2338 K01051 - csv:101205095 620.157