Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2393 ATGTGGATAATTGGAAGACCTGAAGAAATTAAAGTTGTAGAGCATTTTACTTCCAAGGAAGTGATAAGCCTCATTCAAGCGAACAATGAGCAATGCTCTGCACAAGGATTGGATACAGTCAAAGCTGATGGCTTCTTCTCTGTTTATCCAACATTTGTTCTGCATGGTATGCAGTCAAAGTCTAAAAGTGTGAATCATCTAGGATCTGAACCACCAAATATGCAGCAGACTAGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGATACAACCATATCTCCCCGCCACCAGCAGGAGGGAATGTGTCCAATTCAACATCACTGGAATGTACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCGATGTCAAATGATGATTTAAATGAAGACGATGATGATGACACCACAAAAGATTCACATGCAAGTTATGGGCAAGTACAGCACAACTGTCAGCATGCTGTTTCTGCTGCTCCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTATCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCACGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGTGGACGATTTGCCAAGAAAAATGAAGCTAATTCCTCGAGTTCTACTCTGAAGGACAAGGACTCCGGTTCTGGTCAAGCTATCTCGTCGCACTCTGCTGGTTCATCTGGTTCTGAAGCAGCGCCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGAAAGGACCCAGTTGCATGAGGCATATGAAGCTCGAAGTTATGTGAATGGCAGTAGCCAATTCCATAATTACAGTAGCTTCCAAGCTTCTCCGTATGGTTTACGGTCTGGTGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAGCGAAGTGTCTCAGAAAATCAGGCTGCACAGAGGCGTCTTGCCATCAAGTGA 1194 45.31 MWIIGRPEEIKVVEHFTSKEVISLIQANNEQCSAQGLDTVKADGFFSVYPTFVLHGMQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVSAAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNYSSFQASPYGLRSGERGEDGDCSGQQRSVSENQAAQRRLAIK 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36411603 36415942 - CaPI482276_02g023930.1 Cam02g2393 122135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2393 397 Gene3D - 222 284 - -
Cam02g2393 397 MobiDBLite consensus disorder prediction 260 276 - -
Cam02g2393 397 ProSiteProfiles NF-YA/HAP2 family profile. 222 282 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2393 397 SMART cbf3 221 282 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2393 397 MobiDBLite consensus disorder prediction 281 312 - -
Cam02g2393 397 PRINTS CCAAT-binding transcription factor subunit B signature 256 279 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2393 397 PRINTS CCAAT-binding transcription factor subunit B signature 225 247 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2393 397 MobiDBLite consensus disorder prediction 258 316 - -
Cam02g2393 397 ProSitePatterns NF-YA/HAP2 subunit signature. 227 247 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cam02g2393 397 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 75 340 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cam02g2393 397 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 224 279 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2393 397 MobiDBLite consensus disorder prediction 357 397 - -
Cam02g2393 397 MobiDBLite consensus disorder prediction 96 142 - -
Cam02g2393 397 MobiDBLite consensus disorder prediction 97 124 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2393 Cam-Chr2:36411603 Cam11g0167 Cam-Chr11:3258625 4.90E-23 dispersed
Cam01g2570 Cam-Chr1:37351303 Cam02g2393 Cam-Chr2:36411603 7.00E-23 transposed
Cam04g0033 Cam-Chr4:1151922 Cam02g2393 Cam-Chr2:36411603 6.70E-26 transposed
Cam10g1785 Cam-Chr10:31941270 Cam02g2393 Cam-Chr2:36411603 1.50E-23 transposed
Cam02g2393 Cam-Chr2:36411603 Cam03g1337 Cam-Chr3:27336637 9.40E-75 wgd
Cam02g2393 Cam-Chr2:36411603 Cam09g0407 Cam-Chr9:4416948 1.60E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51602 PF02045 CBFB_NFYA 2.40E-26 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2393 K08064 - csv:101212961 624.009