Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2404 ATGGAGCGTTTGGAGGTGAATTTAGAGGAAACAAGAGAATATTACAAGACTGGAACAACAAAGGAAGCATCTTGGAGAGTTTCACAGCTTCAAGCCTTACGCCAATTTCTGGACCAAAATCGTCAACAAATTTACAATGCCCTTTCTCAAGACTTGGGAAAACACCATGTTGAAGCTTTTAGAGATGAGATTGGTAATCTGGAAATGTCCCTCAATTTCGCATTGGAAAATTTGAAACATTGGATGTCTCCCAAAAAGGCAAAATTGCCAGCAATAGCATTACTGAGTTCAGCAGAAGTGGTTGCCCAGCCTCTGGGCGTTGTTCTTATAATCTCATCTTGGAACTTTCCGTTTGGGTTGTCGTTGGAGCCTTTAATAGGAGCATTAGCAGCCGGAAATTGCGTGTTTCTGAAGACGTCGGAGTATTCTCCGGCAAGTTCAGCTTTTCTGGCCAAAGCCATCGGAAATTATGTTGACAACAAAGCCGTTAGAGTCGTTGAAGGAGGGCCGGCGACCGGCGAGCGCCTGCTGCAGCAGCGCTGGGAGAAGATTTTCTTTACAGGAAGTGAACGAGTGGGGCGGATCGTTATGGCGGCCGCCGTGAAACACTTAACGCCGGTGACATTGGAGCTCGGTGGGAAGTGCCCCGCCATTGTTGACTCCCTATCATTTTCATGGGATATTGAGTCTACTGCCAAACGGATCGTGATCGGAAAATTTGGAACCTGCGCCGGACAAGCTTGCATAGCAATCGACTATGTTCTTGTTGAACACAAATTTATATCCACCTTGGTCGAATTGCTGAAGAAGTTCATCAAGGAATTCTTCGATAAAAGTCCGAACCAAGCAAAAAGCATCGCGAGGATCGTAAACAAACAAAATTTCTTGAGGTTGAAGAATCTGGTGGATGAACCTGCTGTCCAAGCTGCAATCATCTATGGAGGATCAATGGACGAGGACAAATTGTTTGTGGAGCCGACTATTCTGTTGAATCCACCAAATGATGCAGGAATTATGAGAGATGAAATCTTTGGGCCAATCCTTCCCATAATTGGACTGGACAAGATTGAAGACAGTATAGATTTCGTCAATTCAAGGCCTAAGCCTCTTGCCATTTATGCCTTCACAAAAGACAAAGCTTTCCAAAGGAGACTCGTCTCAGAAACTTCATCCGGCAGCTTGACATTTAATGATGCAATTATTCAGTATGCAGTGGATACACTCCCGTTTGGAGGGGTTGGTGAAAGTGGGATTGGCCGGTACCACGGAAAATTCTCATTCGACACATTTAGTCATGAAAAGGCAATTTTGAAAAGGAGCTTCTTGGTGGACTTCTGGTTCAGATATCCGCCCTGGAACAATCACAAGCTTCAGCTGCTTAAACACGCTTACAATCTTAACTATTTTCAGTTTGTTCTTATTGTTTTGGGTCTTAAAAAGTCTTAA 1446 44.12 MERLEVNLEETREYYKTGTTKEASWRVSQLQALRQFLDQNRQQIYNALSQDLGKHHVEAFRDEIGNLEMSLNFALENLKHWMSPKKAKLPAIALLSSAEVVAQPLGVVLIISSWNFPFGLSLEPLIGALAAGNCVFLKTSEYSPASSAFLAKAIGNYVDNKAVRVVEGGPATGERLLQQRWEKIFFTGSERVGRIVMAAAVKHLTPVTLELGGKCPAIVDSLSFSWDIESTAKRIVIGKFGTCAGQACIAIDYVLVEHKFISTLVELLKKFIKEFFDKSPNQAKSIARIVNKQNFLRLKNLVDEPAVQAAIIYGGSMDEDKLFVEPTILLNPPNDAGIMRDEIFGPILPIIGLDKIEDSIDFVNSRPKPLAIYAFTKDKAFQRRLVSETSSGSLTFNDAIIQYAVDTLPFGGVGESGIGRYHGKFSFDTFSHEKAILKRSFLVDFWFRYPPWNNHKLQLLKHAYNLNYFQFVLIVLGLKKS 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36503114 36509013 + CaPI482276_02g024040.1 Cam02g2404 122146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2404 481 SUPERFAMILY ALDH-like 9 454 IPR016161 GO:0016491(InterPro)
Cam02g2404 481 Pfam Aldehyde dehydrogenase family 10 435 IPR015590 GO:0016491(InterPro)
Cam02g2404 481 PIRSF ALDH 1 474 IPR012394 GO:0006081(InterPro)
Cam02g2404 481 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 213 416 IPR016163 GO:0016620(InterPro)
Cam02g2404 481 PANTHER ALDEHYDE DEHYDROGENASE 3 478 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(InterPro)|GO:0006081(PANTHER)
Cam02g2404 481 FunFam Aldehyde dehydrogenase 12 219 - -
Cam02g2404 481 FunFam Aldehyde dehydrogenase 213 416 - -
Cam02g2404 481 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 12 434 IPR016162 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2404 K00128 - - csv:101205263 862.833
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2404 Cam-Chr2:36503114 Cam07g0921 Cam-Chr7:22737793 1.20E-161 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g194 . . . . . . . . . . . . . . . Cpe05g00500 . . . . . . . . Cla02g02255 Cam02g2404 Cec02g2438 Cco02g2482 Clacu02g2374 Cmu02g2308 Cre02g2627 . . . . . Csa06g01263 Chy05g00127 Cme05g00154 . . . . . . . . . Cmo02g01283 . Cma02g01246 . Car02g01034 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam06g1135 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.4 3.9e-211 731.1
Cam02g1724 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 3.9e-158 555.1
Cam06g1838 . 69 553 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 3.4e-154 542.0
Cam06g1838 . 1 553 Aldehyde Dehydrogenase Gene Family AT3G48000 75.8 2.7e-250 861.3
Cam02g1724 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.3 6.2e-247 850.1
Cam06g1135 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 54.6 8.9e-161 563.9
Cam02g1724 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 76.9 3.6e-170 594.7
Cam06g1838 . 48 397 Aldehyde Dehydrogenase Gene Family AT1G23800 78.0 2.7e-165 578.6
Cam06g1135 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 1.1e-102 370.5
Cam11g1604 . 7 482 Aldehyde Dehydrogenase Gene Family AT4G34240 63.9 1.6e-181 632.9
Cam11g1605 . 7 574 Aldehyde Dehydrogenase Gene Family AT4G34240 53.2 2.7e-165 578.9
Cam11g1604 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.0 6.3e-178 620.5
Cam11g1605 . 157 572 Aldehyde Dehydrogenase Gene Family AT1G44170 71.4 7.0e-177 617.1
Cam02g2404 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.5 1.6e-117 419.9
Cam07g0921 . 84 498 Aldehyde Dehydrogenase Gene Family AT1G44170 50.1 6.9e-116 414.5
Cam07g0921 . 27 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.6 2.3e-184 642.1
Cam02g2404 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 3.4e-159 558.5
Cam02g1941 . 37 609 Aldehyde Dehydrogenase Gene Family AT1G79440 65.7 1.4e-214 742.7
Cam09g1553 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.7 1.3e-240 829.3
Cam01g1872 . 197 631 Aldehyde Dehydrogenase Gene Family AT2G14170 67.8 1.1e-180 630.2
Cam06g1817 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.6 6.6e-251 863.2
Cam06g1817 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.9 2.2e-254 874.8
Cam02g1764 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 7.1e-269 922.9
Cam01g1495 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.2 2.1e-261 898.3
Cam06g0457 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.7 1.4e-276 948.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009098 2 1 0 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 4 1 1 34