Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2408 ATGACTGATCCTTACCCCATCAACAATAATGGCTCCTTTGGCAATTTATACCCTCTTCACCATTACTTTTCTTCTTCTTCTTCTTCTTCTTCCAATTCTTACTCTCCTTATTATGATCACCCCTTCTCTCTTTCTTACTCCAATGATAATAATAACAATAATAATACCCTAATGACCTCTCCTCACTATCCTTCTTCCTCTCCTCAAGTCCTTCTTCCCCTTCTAAGCTTAAGCCCTGCAAGAGTAGCACAAGATCATGATAATGAAAATCACTCATTTTCCAAAGACTTGATCAACAACTTTTGCAACCCAGCTGAAGATGATGTTGACAATGATAATGATGATGATGATGATCAAAGTGTTACTGTTGCTTTGCATTTAGGGCTTCCAACTCCTTCTTCTTCTTCTTCTAATTCTGATTTGATTTTGAGACTTTCTTCAACTGAGATCTCAGATCAAGATGATCATCATCAATTAGAAGATCAAGTTCCTAATTCTAATTATTCTTCTTCTAATTCCAATATTATTACTAGTGCTGCTACTACTACTACTGGACTTAATAAGGGTCAATATTGGATTCCAACTCCTGCTCAGATTCTTATTGGTCCAACTCAGTTTTCTTGCCCTCTTTGCTTCAAGACTTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCACAATCACTAAGAGGAACACAACCAACAGCAATGCTTAGGCTGCCATGTTATTGCTGTGCAGTTGGGTGCAGAAACAACATAGACCATCCAAGGTCAAAGCCATTAAAAGACTTCAGAACTCTTCAAACACATTACAAAAGAAAACATGGAATGAAGCCATTTACATGTAGAAAATGTGGGAAAGCTTTTGCTGTGAGAGGAGATTGGAGAACCCATGAGAAAAATTGTGGGAAGCTTTGGCATTGCACTTGTGGCTCTGATTTTAAGCATAAGAGATCTCTTAAAGATCATATCAAAGCCTTTGGACATGGCCATGCAGCTTATGGAATTGATCACTCTTTTGAAGAAGATGATGAGCCAGCTTCTGAGATTGAAACATGA 1089 38.11 MTDPYPINNNGSFGNLYPLHHYFSSSSSSSSNSYSPYYDHPFSLSYSNDNNNNNNTLMTSPHYPSSSPQVLLPLLSLSPARVAQDHDNENHSFSKDLINNFCNPAEDDVDNDNDDDDDQSVTVALHLGLPTPSSSSSNSDLILRLSSTEISDQDDHHQLEDQVPNSNYSSSNSNIITSAATTTTGLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAVGCRNNIDHPRSKPLKDFRTLQTHYKRKHGMKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDHSFEEDDEPASEIET 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36548527 36551450 + CaPI482276_02g024080.1 Cam02g2408 122150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2408 362 SMART c2h2final6 290 310 IPR013087 -
Cam02g2408 362 SMART c2h2final6 316 339 IPR013087 -
Cam02g2408 362 SMART c2h2final6 253 285 IPR013087 -
Cam02g2408 362 SMART c2h2final6 206 228 IPR013087 -
Cam02g2408 362 Gene3D Classic Zinc Finger 250 338 - -
Cam02g2408 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 206 233 IPR013087 -
Cam02g2408 362 ProSitePatterns Zinc finger C2H2 type domain signature. 208 228 IPR013087 -
Cam02g2408 362 FunFam Zinc finger protein WIP2 259 341 - -
Cam02g2408 362 PANTHER ZINC FINGER PROTEIN WIP2 37 361 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cam02g2408 362 Pfam Zinc finger, C2H2 type 206 225 IPR013087 -
Cam02g2408 362 SUPERFAMILY beta-beta-alpha zinc fingers 271 310 IPR036236 -
Cam02g2408 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 290 317 IPR013087 -
Cam02g2408 362 MobiDBLite consensus disorder prediction 153 172 - -
Cam02g2408 362 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 289 313 - -
Cam02g2408 362 Gene3D Classic Zinc Finger 205 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1289 Cam-Chr1:23353760 Cam02g2408 Cam-Chr2:36548527 3.10E-66 transposed
Cam03g1001 Cam-Chr3:16577451 Cam02g2408 Cam-Chr2:36548527 2.80E-86 transposed
Cam04g0087 Cam-Chr4:2650758 Cam02g2408 Cam-Chr2:36548527 8.60E-98 transposed
Cam10g1689 Cam-Chr10:30892563 Cam02g2408 Cam-Chr2:36548527 7.40E-95 transposed
Cam02g2408 Cam-Chr2:36548527 Cam09g0416 Cam-Chr9:4516032 5.50E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51605 None None None None Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2408 - - - 0.0