Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2411 ATGGGATCCATGAATTCAAACAATTGGCTTTCCTTTCCACTTTCACCTACTAATCCTTCTTTACCACCACATCTTCAAACCACAACTCATTCCCATCATTTCTCTTTGGGAAATTTGGAGAATGATCATAATATGGACATCCCATTTCAAACCCACCATGAGTGGAATCTGATAAGTAATCAAAGTGGTGGTGAAGTTCCAAAAATTGCAGATTTTTTAGGAGTAAGCAAGGCAGAAAATGAGACAGATCTCATTGGGTTTAATGAGATTCATCATCAAAGCAATGATACAGATTATTTGTTTCCAATCACAAGATTAGTTTCTGTTCATCAACAACAACAACAACAACAACAACAACCCACTGCTCCTCCTCCTAATATAAATCTTGACTCTTCTACTAACTTTGACCTTCAAGATAATTCCAATTGTTTGCAATCTTTAACCCTTTCAATGGGCAGTGGCAAACCCTCTACTTGTGAACAAACAACCTCCACCCCTGACAATAGTACCTCCAATAATAATAACAACAATAATAATACCACTCTTGATGTCACCCCTCGAAGAACTTTGGACACTTTTGGCCAAAGAACTTCTATTTATCGCGGTGTCACCAGGCATAGATGGACAGGAAGGTATGAAGCACATTTGTGGGATAATAGTTGCAGAAGGGAAGGGCAGTCCAGGAAGGGTCGGCAAGGTGGGTATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATCTTGCTGCATTGAAATACTGGGGAACATCCACCACCACAAATTTTCCTATTAGTAACTACGAGAAGGAAGTGGAGGAAATGAAGCACATGACAAGACAAGAATTTGTGGCTGCAATTAGAAGGAAAAGTAGTGGATTTTCAAGGGGTGCATCAATGTATCGTGGAGTTACAAGGCACCACCAGCATGGAAGATGGCAGGCTAGGATTGGAAGAGTAGCAGGAAACAAAGATCTTTATTTGGGAACTTTCAGTACAGAAGAGGAAGCAGCAGAAGCATATGACATAGCGGCGATAAAATTTAGAGGGCTAAATGCAGTAACAAATTTCGACATGAGTCGTTACGACGTGAAAAGCATATTAGAGAGCAACACGCTCCCAATCGGTGGCGGTGCAGCGAAGCGACTAAAAGAGGCTCAAGCCATGGAATCGTCTCGAAAACGAGATGAGATGATTGCCCTAGGTTCCTCTTCCTCCTCCTCCTCTTGCTTCCAATATGGAACCTCTTCCTCCTCAACTAATAATTCCTCCCATTACCCTAATTTACTCCAACAACCAAATCTCAATATGGACCATCACCTTCAAACCCAACCTTTGCTCTCTCTTCAAAACCACCATGATATTTCTCATTACACCCACCATCATTCCTCCTCCTTCCACCACCCTTCTTCTTCTTACATCCACCACTCATCTGATCATTCCGCTTATCCTAACAACAACAGCCATCCATTCTACGGTGGAGGATATCTTCATAATCATCCCGCTTTGCTTCACGGGATGATCAATATGGGCGGTGGAGGTGGCGGAGGCGGCGGAGGAGCTTCTAGTTTGGACACTAATAACAATACTAATACCTTGAATCATTTTGAGAATAATACTAGTGGAGGAGGGTATCTTGGGAATGCATTTGGGATGGGTTCTACCTCGAACAGCAGCGGCGCCGCAGCGGAGGAATATGCGCTCGTTAAGGTTGACTATGACATGCCTAATTCTGGTGGGTACGGTGGTTGGACGGGGGATTCGGTTCAAGGTTCTAACGCTGGGGTTTTCTCTATGTGGAACGATTGA 1803 43.21 MGSMNSNNWLSFPLSPTNPSLPPHLQTTTHSHHFSLGNLENDHNMDIPFQTHHEWNLISNQSGGEVPKIADFLGVSKAENETDLIGFNEIHHQSNDTDYLFPITRLVSVHQQQQQQQQQPTAPPPNINLDSSTNFDLQDNSNCLQSLTLSMGSGKPSTCEQTTSTPDNSTSNNNNNNNNTTLDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAMESSRKRDEMIALGSSSSSSSCFQYGTSSSSTNNSSHYPNLLQQPNLNMDHHLQTQPLLSLQNHHDISHYTHHHSSSFHHPSSSYIHHSSDHSAYPNNNSHPFYGGGYLHNHPALLHGMINMGGGGGGGGGGASSLDTNNNTNTLNHFENNTSGGGYLGNAFGMGSTSNSSGAAAEEYALVKVDYDMPNSGGYGGWTGDSVQGSNAGVFSMWND 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36584015 36587326 + CaPI482276_02g024110.1 Cam02g2411 122153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2411 600 Gene3D AP2/ERF domain 298 358 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2411 600 Gene3D AP2/ERF domain 199 264 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2411 600 SMART rav1_2 199 268 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2411 600 SMART rav1_2 298 362 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2411 600 FunFam AP2-like ethylene-responsive transcription factor 297 358 - -
Cam02g2411 600 SUPERFAMILY DNA-binding domain 297 358 IPR016177 GO:0003677(InterPro)
Cam02g2411 600 SUPERFAMILY DNA-binding domain 198 264 IPR016177 GO:0003677(InterPro)
Cam02g2411 600 CDD AP2 198 264 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2411 600 FunFam AP2-like ethylene-responsive transcription factor ANT 198 264 - -
Cam02g2411 600 MobiDBLite consensus disorder prediction 402 422 - -
Cam02g2411 600 MobiDBLite consensus disorder prediction 457 479 - -
Cam02g2411 600 PRINTS Ethylene responsive element binding protein signature 200 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2411 600 PRINTS Ethylene responsive element binding protein signature 338 358 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2411 600 MobiDBLite consensus disorder prediction 110 134 - -
Cam02g2411 600 MobiDBLite consensus disorder prediction 463 479 - -
Cam02g2411 600 Pfam AP2 domain 299 348 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2411 600 MobiDBLite consensus disorder prediction 148 185 - -
Cam02g2411 600 CDD AP2 297 358 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2411 600 ProSiteProfiles AP2/ERF domain profile. 199 262 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2411 600 ProSiteProfiles AP2/ERF domain profile. 298 356 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g2411 600 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 154 456 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2411 Cam-Chr2:36584015 Cam11g0921 Cam-Chr11:13512729 3.50E-105 dispersed
Cam02g2411 Cam-Chr2:36584015 Cam01g1825 Cam-Chr1:31775597 4.90E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51606 PF00847 AP2 2.90E-09 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2411 K09285 - csv:101207097 1005.36