Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2412 ATGGATTCGCCTCAGCCATCCCCACCACAGCTTCATCTTCACAGTCTCACACCCCTCAAAGTTCTCGGAAAAGGAGCCATGGGAACCGTCTTCCTCGTCCACGACCGCCTTTCCGATGAGCCGGCTCATTTCCCCTTTGCTCTCAAAGTCGTCGAGAAATCCTCTTTCGTCTCCAAACTCGACGCCGACCGGCGAGCTCGTTGGGAGATTCAGGTTCTTTCTCGTTTGTCCTTCCCTAAACCCCACCCTTTCCTCCCCCGCATTATTGGTTCCTTCGAATCCCATGAGTTTTTGGGCTGGGCCGTTCCGTACTGTCCCGGCGGCGATCTTAACGTCTTGCGTTACCGTCAATTGGACCGTGTTTTCTCGCCGGCAGTCATTCGGTTCTATTTGGCCGAGATCGTCTGTGCGCTTGACCATCTTCATAGCATGGGCATCGTCTACCGAGATTTGAAGCCAGAGAATGTGTTGATTCAACAATCGGGTCACGTCACTCTCACGGACTTTGATTTGTCGCGTAGTTTGACACGCAGAACAGTAAAAGACGTCGTCTCGCTTGATAACTCCAACCACGAGAAGCCGCCGATCGCCGTCCGCCCAAAACACGGGCGAAACTTGACGCGATGGATTATGACGACCTCCAATGTTAAAGGCGGGTTAAAAAAGGCTAAATCGGCTCGGGTTAGTCCTGTGAGTCGCCGGAAGCCGAGTTTCACGAATGGCGAGCGGTCAAATTCGTTCGTCGGAACGGAGGAGTATGTCTCACCGGAGGTTGTTCGAGGCGACGGTCATGAATTCGCCGTCGACTGGTGGGCCCTGGGGATTCTCACGTACGAGATGCTCTACGGGACGACGCCGTTTAAGGGGAAAAACAGGAAAGAGACGTTCCGAAACGTTTTGGTTAAAGCTCCGGAGTTGATTGGAAAGCGTTCGGATTTAACGGATTTGATCGAACGGTTGCTGGTAAAAGACCCCACGAAGCGGTTGGGGTACGTAAGGGGCGCGTGCGAGATCAAAGAGCATGCGTTTTTTAACGGCGTTAAGTGGGACCTATTAACGGAGGTCACGCGACCGCCGTTTTTACCTCCTCGTGAAGAAACGGAATGGGCGGAGAATTTAACGCTCGGTTGTGTGAGTATAACGGAATACTTTCTCAGACAGAGATCGCCACCTTCGTTTCCACCGTCGCCGTCGTCAACTCCGTCGACCTCCTTCAGTTGGCAGAATGACATGTCATTGACGGAGTTCTGA 1251 52.92 MDSPQPSPPQLHLHSLTPLKVLGKGAMGTVFLVHDRLSDEPAHFPFALKVVEKSSFVSKLDADRRARWEIQVLSRLSFPKPHPFLPRIIGSFESHEFLGWAVPYCPGGDLNVLRYRQLDRVFSPAVIRFYLAEIVCALDHLHSMGIVYRDLKPENVLIQQSGHVTLTDFDLSRSLTRRTVKDVVSLDNSNHEKPPIAVRPKHGRNLTRWIMTTSNVKGGLKKAKSARVSPVSRRKPSFTNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFKGKNRKETFRNVLVKAPELIGKRSDLTDLIERLLVKDPTKRLGYVRGACEIKEHAFFNGVKWDLLTEVTRPPFLPPREETEWAENLTLGCVSITEYFLRQRSPPSFPPSPSSTPSTSFSWQNDMSLTEF 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36601438 36602688 + CaPI482276_02g024120.1 Cam02g2412 122154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2412 416 Gene3D Phosphorylase Kinase; domain 1 17 108 - -
Cam02g2412 416 FunFam Serine/threonine-protein kinase UCNL 16 108 - -
Cam02g2412 416 SMART serkin_6 16 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g2412 416 ProSiteProfiles Protein kinase domain profile. 16 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g2412 416 FunFam Serine/threonine-protein kinase OXI1 242 363 - -
Cam02g2412 416 Pfam Protein kinase domain 19 182 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g2412 416 Pfam Protein kinase domain 239 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g2412 416 PANTHER FLIPPASE KINASE 1-RELATED 10 365 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cam02g2412 416 ProSitePatterns Protein kinases ATP-binding region signature. 22 49 IPR017441 GO:0005524(InterPro)
Cam02g2412 416 Gene3D Transferase(Phosphotransferase) domain 1 241 363 - -
Cam02g2412 416 SUPERFAMILY Protein kinase-like (PK-like) 17 409 IPR011009 -
Cam02g2412 416 FunFam Serine/threonine-protein kinase OXI1 109 177 - -
Cam02g2412 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam02g2412 416 MobiDBLite consensus disorder prediction 389 416 - -
Cam02g2412 416 Gene3D Transferase(Phosphotransferase) domain 1 109 177 - -
Cam02g2412 416 MobiDBLite consensus disorder prediction 399 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2412 Cam-Chr2:36601438 Cam09g0839 Cam-Chr9:8679907 4.00E-76 dispersed
Cam02g2412 Cam-Chr2:36601438 Cam02g2273 Cam-Chr2:35358595 2.70E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85012 PF00069 Pkinase 1.20E-30 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2412 - - - 0.0