Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2452 ATGGGAAAATGCTGGCTTCTAGTTATAAACAGAGATGATTGTATGAGTACCATAGAATTCAGAGAGAAGGGGATGTATCAGCAGCCGAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGTTGCGCCTTGCATCAATAGATTCTCAAGCAGCAACTTCTCGTCCAGAGTTCAAAGGTGTCACTTTCAGGAAAGCTTCAACTGGTGGTTTTGCTAGGAGTCGTAATGATGTACACGAGCTACTCGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGGCACACTCTTTGTTCAAGCTGCAAGGCGAGGGTTCAGAACTGTTGCCCGACCTGCCGGCATGAGCTGGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCTGAGTCGCTCGAGCTCCCTTGTGTGTACCAAAACCTAGGTTGCATTGACATGTTCCCATATTACAGCAAGCTTAAACATGAGAAGAATTGTAAATACCGGCCGTACAACTGCCCTTACGCTGGAGGTGAATGTCGTGTAACTGGTGATATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTTGATATGCATGATGGATGTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTCAACTGCTTCGGACGACAATTCTGTTTGCACTTCGAAGCATTTCGCTTAGGAACAGCACCTGTTTACATGGCATTCCTCCGGTTCATGGGAGACGATGACGATGCAAAACAATTTTCTTACAGTCTGGAAGTTGGTGGAAATGGAAGAAAACTCATCTGGCAAGGTATTCCTAGAAGTATCCGCGATAGCCATCGGAAGGTTCGAGACAGTCACGATGGACTAATCATTCAGAGGAAGTTGGCACTATTCTGCTCTGGAAATGAGGGGATGGAACTGAAGTTAAAGGTTACAGGGCGAATATGGAGAGTAAGAGTCTTCACCGGCTTAAACCCTAAACCCTGTGGAGTTGGCGTAGTGGGAAGGAAGAAAACCGCCGAACAAATGCTGATTACTCGAAAGCTTTCTGCTTCGAACCTCAAATCCTTTCTTTCTCTGCGTTTCATTTCCCCTTCTCTGACTTCGCACTTGTTTTCTTCACCTCTCTGCTTAAACCCACCAATCCTTTGCCCACTTCCTCCCACTCTTTCGCCGTCTTTCTCTTCCAAACCCACACCTCCAGAAGCTTCCAACCTCACCCGCGATGGCAACTACGACGAAGCCACTTCCCGATTCTCCCTCGTCTGCCCTGGCTGTGGAGTTCACATGCAAGACACCAATCCCAAACATCCTGGCTTCTTCGTCAAACCCTCGAGAAAAGATTCCAATTATCGCTTACTTACCCATCTTGTCCCCGTCCATGATGAATCTGAATGCTCCGAATTTCTCAAGAGAGGCCTCGTAATCGAGCCAGATAATCAGAAAACTGAAGAGAATGTGACCGAGAAACCCCACAAGCCGACCGTGTGTTCGCGGTGCCACTCATTGAGGCATTATGGGAAGGTAAAGGATCCTTCAGTAGAGAATTTACTGCCGGATTTTGATTTCGATCATACCATCGGTAGGAGACTGGCGTCGACTTCGGGAACCCGATCTGTTGTTCTGATCGTCGTTGATGCTGCAGATTTTGATGGGTCATTCCCAAAGAAGGTAGCGAACTTGGTCTCGGCCACTATTGAGGATAATTCAGCTGCCTGGAAACAGGGGAAATCAGGGAATGTGCCTAGAGTGGTGCTTGTAGTGACAAAAATTGATCTGCTGCCTAGCTCTTTATCACCGACGAGATTTGAGCATTGGGTGAGGCAGAGAGCGAGGGAGGGAGGGATTAACAAGATAACGAGTTTGCATATGGTGAGTGCGGTTAGAGATTGGGGGCTGAAAATTTTGGTGGAGGATGTAATTGAATTGGTTGGGGCGAGAGGAAATGTGTGGGCAATTGGAGCACAAAATGCTGGGAAAAGCACGCTGATTAATTCAATAGGAAAGCATGTTGGTGGGAAGATTACGCAGTTGACTGAAGCACCAGTTCCTGGGACAACGTTGGGGATAATCAGAGTAGAGGGAATTTTTCCGGGTCAAGCCAAATTGTTTGATACTCCTGGGCTTCTCAATCCCCATCAGATTACTACGAGATTGACTAGGGAAGAGCAGAAACTTGTTCACATCAGCAAGGAATTGAAGCCCAGGACTTACAGGATTAAGGTTGGTCACACAATTCATGTTGCTGGCCTCATGAGGCTAGATGTGGAAGAAACAACTGTGGATACAATTTATGTTACGGTGTGGGCATCTCCTTATCTTCCATTACACATGGGGAAAACAGAAAATGCAACCAAAATACAGGAGGACCATTTTGGGAATCAATTGCAGCCACCTATAGGCAAAGATCGAGTTGCAGAACTTGGAAAATGGGTGAGAAGGGAATTTCGTGTTTGTGGAAGTAGTTGGGATTCAAGTTGTGTAGATGCTGCTGCTGCTGGCCTGGGTTGGTTCGCCATTGGACTAAAAGGCGAGGCAGTCTTGAGCATATGGACTTATGAGGGGATCGAGGTTGTTATACGAAGTTCTGTCATTCCTTACAGATCAAACTTCTTTGAAGATGCTGGATTTACAGTCTCGAAAATTGTCTCCAAGGCTGATCAGGTTGCAAATAAACCACATGATCAAAGCGAAAAGAAGAAAAAGGGTGACCCCAAAGTCCGTGTGCTGGCTGAGACGTCAGTATCGAAAGCTCGCTCCAAATATGATTCTGCTTAA 2838 46.3 MGKCWLLVINRDDCMSTIEFREKGMYQQPKSREEHASSAASFCKEVTELRLASIDSQAATSRPEFKGVTFRKASTGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECRVTGDIPYLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGMELKLKVTGRIWRVRVFTGLNPKPCGVGVVGRKKTAEQMLITRKLSASNLKSFLSLRFISPSLTSHLFSSPLCLNPPILCPLPPTLSPSFSSKPTPPEASNLTRDGNYDEATSRFSLVCPGCGVHMQDTNPKHPGFFVKPSRKDSNYRLLTHLVPVHDESECSEFLKRGLVIEPDNQKTEENVTEKPHKPTVCSRCHSLRHYGKVKDPSVENLLPDFDFDHTIGRRLASTSGTRSVVLIVVDAADFDGSFPKKVANLVSATIEDNSAAWKQGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREGGINKITSLHMVSAVRDWGLKILVEDVIELVGARGNVWAIGAQNAGKSTLINSIGKHVGGKITQLTEAPVPGTTLGIIRVEGIFPGQAKLFDTPGLLNPHQITTRLTREEQKLVHISKELKPRTYRIKVGHTIHVAGLMRLDVEETTVDTIYVTVWASPYLPLHMGKTENATKIQEDHFGNQLQPPIGKDRVAELGKWVRREFRVCGSSWDSSCVDAAAAGLGWFAIGLKGEAVLSIWTYEGIEVVIRSSVIPYRSNFFEDAGFTVSKIVSKADQVANKPHDQSEKKKKGDPKVRVLAETSVSKARSKYDSA 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36975189 36982048 + CaPI482276_02g024520.1 Cam02g2452 122194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2452 945 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 199 IPR013083 -
Cam02g2452 945 MobiDBLite consensus disorder prediction 908 927 - -
Cam02g2452 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 559 743 IPR027417 -
Cam02g2452 945 Pfam Sina, TRAF-like domain 235 332 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cam02g2452 945 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 143 IPR013083 -
Cam02g2452 945 PANTHER GENETIC INTERACTOR OF PROHIBITINS 3, MITOCHONDRIAL 418 924 IPR050896 GO:0005739(PANTHER)
Cam02g2452 945 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 205 332 IPR008974 GO:0005515(InterPro)
Cam02g2452 945 CDD RING-HC_SIAHs 89 127 - -
Cam02g2452 945 FunFam E3 ubiquitin-protein ligase SINAT5-like 200 332 - -
Cam02g2452 945 Pfam YqeH-like, C-terminal 787 884 IPR048422 -
Cam02g2452 945 CDD YqeH 517 729 - -
Cam02g2452 945 ProSiteProfiles Zinc finger RING-type profile. 91 127 IPR001841 -
Cam02g2452 945 SUPERFAMILY TRAF domain-like 144 335 - -
Cam02g2452 945 ProSiteProfiles Zinc finger SIAH-type profile. 144 204 IPR013010 GO:0008270(InterPro)
Cam02g2452 945 MobiDBLite consensus disorder prediction 911 927 - -
Cam02g2452 945 FunFam E3 ubiquitin-protein ligase SINAT3 141 199 - -
Cam02g2452 945 Pfam Sina, zinc finger 140 215 - -
Cam02g2452 945 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 91 126 IPR049548 -
Cam02g2452 945 Pfam 50S ribosome-binding GTPase 670 744 IPR006073 GO:0005525(InterPro)
Cam02g2452 945 Gene3D - 548 734 IPR027417 -
Cam02g2452 945 SUPERFAMILY RING/U-box 73 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0505 Cam-Chr1:5341939 Cam02g2452 Cam-Chr2:36975189 7.90E-22 dispersed
Cam02g2452 Cam-Chr2:36975189 Cam04g0103 Cam-Chr4:3182037 5.60E-134 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2452 - - - 0.0