Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2480 ATGGGAGTCCAGCTTGAGAGGTTGAAGCCTGTATTCAGTAGATCGCCCCGCCACTGCTTGCCACCGATCGCCTTCGCCACTGCTTCCCCACGATCGCCTCCGCCTTCCACTTTGCAATCCACTCTTGCAACCATGGGTTCCGATGCGGATATGGAGGATTATGGTTTCGAATACTCGGACGATGAACCTGAAGAGCAGGATGTTGATATTGAAAATCAATACTACAACTCTAAAGGGTTGGTTGAAACGGACCCCGAAGGAGCTCTTGCAGGGTTTGCCGAGGTGGTACGCATGGAACCTGAGAAGGCAGAGTGGGGCTTCAAGGCTCTCAAGCAAACTGTCAAGCTTTATTATAGACTGGGGAAGTATAAAGAAATGATGGATTCATATCGAGTGATGCTTACATACATAAAATCAGCAGTGACCCGTAATTATAGCGAAAAATGTATAAACAATATCATGGATTTTGTATCTGGATCAGCAAGTCAGAGCTTTGGTCTCTTGCAAGAATTTTATCAAACCACTTTGAAAGCCCTTGAAGAGGCAAAGAATGAGAGGCTTTGGTTCAAGACTAATTTAAAGCTCTGCAAGATTTGGTTTGATATTGGTGAATATGGTCGCATGATTAAGATTTTGAAGGAACTCCATAAGTCCTGTCAAAGAGAAGATGGTACAGATGATCAAAAGAAAGGAAGTCAACTTCTGGAAGTATATGCAATTGAGATTCAAATGTATACTGAGACTAAAAATAACAAAAAGCTAAAGCAATTATACCAGAAAGCTCTTGCAATCAAGTCGGCCATACCCCATCCACGAATTATGGGAATAATTCGGGAGTGTGGAGGAAAGATGCATATGGCAGAACGTCAGTGGCCAGAAGCGGCAACTGATTTCTTTGAGGCTTTTAAAAACTATGATGAAGCTGGGAACCAAAGGCGTATCCAGTGCCTGAAGTATCTAGTTTTGGCTAATATGCTGATGGAATCTGAAGTTAATCCATTCGATGGTCAAGAGGCGAAACCGTATAAAAATGACCCCGAGATCTTGGCAATGACTAATCTTATTGCAGCATACCAAAGGAATGAGATACTTGAGTTTGAGAAAATTCTCAAGAGCAATAGAAGGACAATAATGGATGATCCATTCATTCGAAATTACATTGAAGATCTGTTGAAGAATGTCAGAACGCAGGTGTTACTCAAACTTATCAAGCCTTACACAAGAATCCGGATTCCATTTATATCAAAGGAACTCAATGTACCGGAGAAAGATGTTGAGCAATTATTGGTTTCTCTAATCCTGGATAATCGCATTGATGGTCACATTGATCAAGTCAACCGGCTTTTGGAACGTGGTGACAGGTCAAAGGGAATGAAGAAGTATACTGCCATAGATAAATGGAACACCCAGTTGAAATCCCTCTTTCAAACTAAGTTTAAACGAGGAAATTTCCCTCAAGGAAGAGTTGCTGACAGCCATCCAGGTGAGCGCGAGCTTCTCTGTCTTCTGCTTCTTTTCTCCAGAATTTGGCCTTTCAGCAATCTCAGGGATCTTGAGTTTGCTTTGGTGATTTCCTCGGATCTTGCTTTTCTGGTACTGGGGAGTCGTGATTTTAGCTTCTTTGGTGAATTTCTAAGTTTTAAGAGAGTTTGTACTTCAAATTTTTACTTCGTTAAGAAGTGCTGCGAACTTGGGGTTGTTGAGTTGAAGGGAGGGTTAGAATATTTTACATCCATGAGAAGATCAGGTGTAAACCAACCAAAAGTCAAGCGTCTTGTTGGAAAATACGAAATTGGTCGAACAATTGGTGAGGGTACATTTGCGAAAGTGAAAATTGCCAAAAATTCGGAGACTGGGGATCATGTAGCAATAAAGATTCTCGACAAAGAGAAAGTTCTGAAGCACAAGATGGCTGAACAGATCAAGCGGGAAATTGCCACAATGAAACTAATAAAGCATCCACATGTCGTCCAATTATTTGAGGTCATGGGGAGCAAAACCAAGATATTTATTGTTTTGGAATTTGTTACTGGAGGAGAACTTTTTGATAAAATTGTAAATCATGGACGGATGAGTGAAAATGAGGCACGGAGATATTTCCAGCAACTTATAAATGCTGTTGATTATTGTCATAGCAGGGGTGTTTACCACAGGGATCTTAAGCCAGAAAATCTATTGTTAGATGCCTACGGGAACCTTAAAGTGTCTGATTTTGGATTGAGTGCACTGTCACAACAAGTTAAG 2244 41.04 MGVQLERLKPVFSRSPRHCLPPIAFATASPRSPPPSTLQSTLATMGSDADMEDYGFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDSYRVMLTYIKSAVTRNYSEKCINNIMDFVSGSASQSFGLLQEFYQTTLKALEEAKNERLWFKTNLKLCKIWFDIGEYGRMIKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWPEAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEILEFEKILKSNRRTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNTQLKSLFQTKFKRGNFPQGRVADSHPGERELLCLLLLFSRIWPFSNLRDLEFALVISSDLAFLVLGSRDFSFFGEFLSFKRVCTSNFYFVKKCCELGVVELKGGLEYFTSMRRSGVNQPKVKRLVGKYEIGRTIGEGTFAKVKIAKNSETGDHVAIKILDKEKVLKHKMAEQIKREIATMKLIKHPHVVQLFEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVK 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37254928 37269485 + CaPI482276_02g024800.1 Cam02g2480 122222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2480 748 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 385 467 IPR000717 -
Cam02g2480 748 MobiDBLite consensus disorder prediction 24 44 - -
Cam02g2480 748 FunFam COP9 signalosome complex subunit 2 108 482 - -
Cam02g2480 748 ProSitePatterns Serine/Threonine protein kinases active-site signature. 715 727 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam02g2480 748 Pfam PCI domain 370 450 IPR000717 -
Cam02g2480 748 FunFam Non-specific serine/threonine protein kinase 587 675 - -
Cam02g2480 748 SMART PCI/PINT associated module 209 383 - -
Cam02g2480 748 ProSitePatterns Protein kinases ATP-binding region signature. 602 625 IPR017441 GO:0005524(InterPro)
Cam02g2480 748 FunFam Maternal embryonic leucine zipper kinase 588 748 - -
Cam02g2480 748 Gene3D Transferase(Phosphotransferase) domain 1 586 748 - -
Cam02g2480 748 SUPERFAMILY Winged helix DNA-binding domain 379 455 IPR036390 -
Cam02g2480 748 MobiDBLite consensus disorder prediction 30 44 - -
Cam02g2480 748 Gene3D - 108 483 - -
Cam02g2480 748 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 46 480 IPR050871 GO:0000338(PANTHER)|GO:0008180(PANTHER)
Cam02g2480 748 ProSiteProfiles Protein kinase domain profile. 596 748 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g2480 748 SUPERFAMILY Protein kinase-like (PK-like) 592 743 IPR011009 -
Cam02g2480 748 SMART serkin_6 596 748 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g2480 748 ProSiteProfiles PCI domain profile. 287 456 IPR000717 -
Cam02g2480 748 Pfam Protein kinase domain 596 744 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2480 Cam-Chr2:37254928 Cam03g0790 Cam-Chr3:8904221 2.20E-69 dispersed
Cam10g1270 Cam-Chr10:26136952 Cam02g2480 Cam-Chr2:37254928 8.30E-19 transposed
Cam10g1773 Cam-Chr10:31802146 Cam02g2480 Cam-Chr2:37254928 2.50E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85014 PF00069 Pkinase 7.30E-46 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2480 K12176 - csv:116403519 854.744