Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2482 ATGCTTGCTGCCATAGGGCTCGACTCTCCTCTTTCATCTCTATTCTTCGACCTTTTCTGCGTACGGAGGTGCTCAATTCCGTCTCTGGTCTCCAGCTCTTTGGCTACTCCCTTCAATTCCCAATTCAGGGTCTTCAGGGAAGGGAGATTACGCGTCCAAGGGAAGACTATGGCTGTAACAGCCCCAGGGCAGCTCAACGTTAACGAGTCTCCTTCGTGGGGATCTAGAAGTGTCGACTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCACTGAAGAAAATACGAATGGACAATGAGAGGGAGGGGTTCCCTATTACTGCCATACGAGAAATCAAAATTTTAAAGAAGCTTCATCATGAAAATGTAATCAAGTTGAAAGAGATCGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAGCCAGATGGTAATAAGTACAAAGGTGGAATCTACATGGTTTTTGAGTACATGGACCATGATTTGACTGGTCTTGCTGATCGTCCAGGGATGAGATTTTCAGTTCCTCAAATCAAGTGTTACATGAGGCAGCTTCTCACCGGGCTTCACTATTGTCATGTAAATCAAGTACTCCATAGAGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAATGATCACAATGCAAATTTAACAAATCGTGTCATTACCTTATGGTACAGACCTCCTGAATTGCTGCTTGGGTCGACCAAATATGGTCCAGCTGTGGATATGTGGTCTGTTGGTTGTATCTTTGCAGAACTTCTACATGGGAAGCCAATATTCCCTGGGAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTGTGTGGTGCTCCGGATGAAGTCAATTGGCCTGGAGTTTCTAAAATCCCTTGGTACAATAATTTCAAGCCCACAAGGCCGATGAAGAGACGTCTTAGAGAAGTTTTCCGGCATTTTGATCGTCATGCTCTAGAACTGTTGGAGAAGATGCTTACGCTCGATCCTTCTCAGAGGATATCTGCCAAGGATGCCCTAGATGCGGAGTATTTTTGGACGGATCCATTACCATGTGATCCTAAAAGTTTGCCCAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGCCAACAGCAACGACAACATGAAGAAACTGCAAAGCGACAGAAGTTGCAACATCCACAGCATGCACGCCTTCCACCTATTCAGCAATCGGGGCAAGCACATGCACAGATGCGACCAGTGCCTAACCAACCAATTCATGGGTCCCAACAACCAGTTGCTGCAGGGCCTAGCCATCATTTTGGAAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCCGGTGGAAATCCCCCTTCTGGATACAACCACTCAAGTCGTGGTGGCGGTCAAGGTGGTTATGGTAACACACAATATGCTCAAGGACGAGGTGCTGCACCCTATGGGTCTGGTAACATGTCTGGTGCTGGTCCTCGAGGTGGAGCTGGAGGCAGCGGTGGTTATGGCGTGGGAGCTCCAAATTATCCACAGAATGGTCCATATCCTGGTAGTTCCGGTACTGGCCGTGGCTCCAATGTGATGGGTGGAAATCGCAACCAACAATATGGGTGGCAACAACAATGA 1719 46.77 MLAAIGLDSPLSSLFFDLFCVRRCSIPSLVSSSLATPFNSQFRVFREGRLRVQGKTMAVTAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHPQHARLPPIQQSGQAHAQMRPVPNQPIHGSQQPVAAGPSHHFGKPRGPPGPGRYPGGNPPSGYNHSSRGGGQGGYGNTQYAQGRGAAPYGSGNMSGAGPRGGAGGSGGYGVGAPNYPQNGPYPGSSGTGRGSNVMGGNRNQQYGWQQQ 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37278426 37285159 - CaPI482276_02g024820.1 Cam02g2482 122224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2482 572 CDD STKc_CDK9_like 81 380 - -
Cam02g2482 572 FunFam Cyclin-dependent kinase C-2 68 177 - -
Cam02g2482 572 MobiDBLite consensus disorder prediction 429 456 - -
Cam02g2482 572 MobiDBLite consensus disorder prediction 484 503 - -
Cam02g2482 572 MobiDBLite consensus disorder prediction 543 572 - -
Cam02g2482 572 PANTHER CELL DIVISION PROTEIN KINASE 81 380 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cam02g2482 572 ProSiteProfiles Protein kinase domain profile. 81 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g2482 572 SUPERFAMILY Protein kinase-like (PK-like) 75 388 IPR011009 -
Cam02g2482 572 MobiDBLite consensus disorder prediction 391 572 - -
Cam02g2482 572 Pfam Protein kinase domain 81 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g2482 572 SMART serkin_6 81 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g2482 572 Gene3D Phosphorylase Kinase; domain 1 68 177 - -
Cam02g2482 572 MobiDBLite consensus disorder prediction 393 422 - -
Cam02g2482 572 FunFam Cyclin-dependent kinase C-2 178 420 - -
Cam02g2482 572 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524(InterPro)
Cam02g2482 572 Gene3D Transferase(Phosphotransferase) domain 1 178 420 - -
Cam02g2482 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2482 Cam-Chr2:37278426 Cam10g1268 Cam-Chr10:26129379 1.00E-271 dispersed
Cam02g2482 Cam-Chr2:37278426 Cam04g1236 Cam-Chr4:26386648 5.00E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85016 PF00069 Pkinase 5.50E-75 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2482 K08819 - csv:101220936 983.4