Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2493 ATGATTTTGGTCAAATTAGATTCAAGGATTAAAGCTTTAATGGTTCATTGCACGATCAAGTCACTTGTCTTCAATGCAAATAGGAGATCCACTAGAGTTACGAACAACCTACCCTACAGCGCTGGTCTTTTTTTCACTACTCGAAGAAGCATAAGAGACATGGAGTTGGCCGTCCATTCCCCTCTTTCCTTCTCCACTTATTCATCTCACCCTCCCAATTCCTTAATCCCATCCCTACATAGAAGTAGACTCTTCAGTTTTCCGCCATTGTTATCGCCCCGTCTAAGCTTCCAGTTCCGGCCAAAGGGACGATCACTTCTTCAACCTCTACAAGCTTCTCGTTGGCTTCTGGCACCCGTCGGCGATGGAGAGTGGAAGCATATAGGTTCGAAAGTAGAAATGCCAGATGCTTTCGAAATTGTGTCGAATGAGGTCACTGTTGGCCGCCTTCCTGATAAAGCCGACATTGTAATTCCGGTTGCTACAGTTTCTGCTCTACATGCTCGCATCAAAAACCAAGAAGACAGGCTCTTGGTCATAGATCTAGACAGCACCAATGGGACTTTCATCGATGACAAGAGACTTAACCCTGGGGTTGTTGCTGCTGTATCATCTGGCAATTGCATTACTTTTGGTGACATCCATCTGGCCATGTTTCAGGTCTCAAAGCTGAAAACTGTTGAAGCTGCTACCAAAATCCAAGAAGAATCTAAGGAGCCAATCAGTGATTCTGGAACAAAAGTTAGGGGAGTGGAGTCAACTCCACTCCTTGCTTTGCTTAACCGCAACCATCGAAGCCCTGTGATCCGATTCTTCTCTCTTCCTTTGGAAATGCCGACCAGTTTGGTCCCTTCTCACAGACCGGAGCTTCTCACCGTCGCCGTCGCTGTGGTTGCTGTCGGCGTTGCCACTGCCTACTATTTCTATATCACCAAGAAATCCAAACCCAAAGGTTGCTTGGACCCTAATAACTTCAAGGAATTTAAACTAGTTAAACGCACACAGCTTAGCCATAATGTAGCAAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAATTTTGGGTCTGCCGATTGGGCAGCATATCAGCTGCAGAGGAAAAGATAGCGAAGGTGGAGATGTTGTGAAACCTTACACTCCAACCACTTTGGACACAGATGTTGGATACTTTGATTTGGTCATAAAGATGTATCCACAAGGAAGGATGTCCCACCACTTCCGTGAGATGCGTGAAGGTGATTACTTGGCTGTGAAAGGTCCAAAGGGACGATTCAAGTATGCACCTAACGAAGTTGAGGCCTATGGAATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTGCAAGAGCAATACTAGAAAATCCAGTGGATCACACCAATGTGCATCTTATATATGCTAATGTAACTTATGAAGACATTCTTCTAAAGGAAGAATTGGATAGTCTTGCGGCTAGGTTTCCCACCCGCTTTACTATCTACTATGTGCTCAATCAGCCTCCTGAAGGATGGGATGGTGGTGTTGGCTTCATATCTGAGGAAATGATACGACTACACTGTCCTGCGCCATCCCCTAATGTTCGGATTTTGAGGTGCGGGCCACCCCCCATGAACAAAGCTATGGCTAAGCACCTCAACACTATTGGCCATCCTCCCCAAATGCAGTTCCTGTTCTAA 1680 46.01 MILVKLDSRIKALMVHCTIKSLVFNANRRSTRVTNNLPYSAGLFFTTRRSIRDMELAVHSPLSFSTYSSHPPNSLIPSLHRSRLFSFPPLLSPRLSFQFRPKGRSLLQPLQASRWLLAPVGDGEWKHIGSKVEMPDAFEIVSNEVTVGRLPDKADIVIPVATVSALHARIKNQEDRLLVIDLDSTNGTFIDDKRLNPGVVAAVSSGNCITFGDIHLAMFQVSKLKTVEAATKIQEESKEPISDSGTKVRGVESTPLLALLNRNHRSPVIRFFSLPLEMPTSLVPSHRPELLTVAVAVVAVGVATAYYFYITKKSKPKGCLDPNNFKEFKLVKRTQLSHNVAKFRFSLPTPTSILGLPIGQHISCRGKDSEGGDVVKPYTPTTLDTDVGYFDLVIKMYPQGRMSHHFREMREGDYLAVKGPKGRFKYAPNEVEAYGMLAGGTGITPMFQVARAILENPVDHTNVHLIYANVTYEDILLKEELDSLAARFPTRFTIYYVLNQPPEGWDGGVGFISEEMIRLHCPAPSPNVRILRCGPPPMNKAMAKHLNTIGHPPQMQFLF 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37341556 37347363 - CaPI482276_02g024930.1 Cam02g2493 122235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2493 559 CDD cyt_b5_reduct_like 328 559 - -
Cam02g2493 559 Gene3D - 128 225 - -
Cam02g2493 559 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 473 484 IPR001709 GO:0016491(InterPro)
Cam02g2493 559 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 529 537 IPR001709 GO:0016491(InterPro)
Cam02g2493 559 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 435 454 IPR001709 GO:0016491(InterPro)
Cam02g2493 559 Pfam Oxidoreductase NAD-binding domain 436 543 IPR001433 GO:0016491(InterPro)
Cam02g2493 559 CDD FHA 138 216 - -
Cam02g2493 559 SMART FHA_2 144 195 IPR000253 GO:0005515(InterPro)
Cam02g2493 559 PANTHER NADH-CYTOCHROME B5 REDUCTASE 294 559 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cam02g2493 559 FunFam NADH-cytochrome b5 reductase 318 417 - -
Cam02g2493 559 PRINTS Cytochrome B5 reductase signature 473 484 - -
Cam02g2493 559 PRINTS Cytochrome B5 reductase signature 529 537 - -
Cam02g2493 559 PRINTS Cytochrome B5 reductase signature 354 365 - -
Cam02g2493 559 PRINTS Cytochrome B5 reductase signature 412 426 - -
Cam02g2493 559 PRINTS Cytochrome B5 reductase signature 376 383 - -
Cam02g2493 559 PRINTS Cytochrome B5 reductase signature 435 454 - -
Cam02g2493 559 FunFam NADH-cytochrome b5 reductase 417 559 - -
Cam02g2493 559 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 323 427 IPR017927 GO:0016491(InterPro)
Cam02g2493 559 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 415 554 IPR039261 -
Cam02g2493 559 SUPERFAMILY SMAD/FHA domain 135 219 IPR008984 GO:0005515(InterPro)
Cam02g2493 559 ProSiteProfiles Forkhead-associated (FHA) domain profile. 145 195 IPR000253 GO:0005515(InterPro)
Cam02g2493 559 Gene3D - 417 559 IPR039261 -
Cam02g2493 559 Gene3D Translation factors 316 416 - -
Cam02g2493 559 SUPERFAMILY Riboflavin synthase domain-like 319 429 IPR017938 -
Cam02g2493 559 FunFam Predicted protein 123 225 - -
Cam02g2493 559 Pfam Oxidoreductase FAD-binding domain 328 426 IPR008333 -
Cam02g2493 559 Pfam FHA domain 145 212 IPR000253 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2493 Cam-Chr2:37341556 Cam02g2500 Cam-Chr2:37372985 2.10E-181 dispersed
Cam02g2493 Cam-Chr2:37341556 Cam02g2496 Cam-Chr2:37357660 2.90E-98 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2493 K00326 - csv:101219272 501.901