Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2493 ATGATTTTGGTCAAATTAGATTCAAGGATTAAAGCTTTAATGGTTCATTGCACGATCAAGTCACTTGTCTTCAATGCAAATAGGAGATCCACTAGAGTTACGAACAACCTACCCTACAGCGCTGGTCTTTTTTTCACTACTCGAAGAAGCATAAGAGACATGGAGTTGGCCGTCCATTCCCCTCTTTCCTTCTCCACTTATTCATCTCACCCTCCCAATTCCTTAATCCCATCCCTACATAGAAGTAGACTCTTCAGTTTTCCGCCATTGTTATCGCCCCGTCTAAGCTTCCAGTTCCGGCCAAAGGGACGATCACTTCTTCAACCTCTACAAGCTTCTCGTTGGCTTCTGGCACCCGTCGGCGATGGAGAGTGGAAGCATATAGGTTCGAAAGTAGAAATGCCAGATGCTTTCGAAATTGTGTCGAATGAGGTCACTGTTGGCCGCCTTCCTGATAAAGCCGACATTGTAATTCCGGTTGCTACAGTTTCTGCTCTACATGCTCGCATCAAAAACCAAGAAGACAGGCTCTTGGTCATAGATCTAGACAGCACCAATGGGACTTTCATCGATGACAAGAGACTTAACCCTGGGGTTGTTGCTGCTGTATCATCTGGCAATTGCATTACTTTTGGTGACATCCATCTGGCCATGTTTCAGGTCTCAAAGCTGAAAACTGTTGAAGCTGCTACCAAAATCCAAGAAGAATCTAAGGAGCCAATCAGTGATTCTGGAACAAAAGTTAGGGGAGTGGAGTCAACTCCACTCCTTGCTTTGCTTAACCGCAACCATCGAAGCCCTGTGATCCGATTCTTCTCTCTTCCTTTGGAAATGCCGACCAGTTTGGTCCCTTCTCACAGACCGGAGCTTCTCACCGTCGCCGTCGCTGTGGTTGCTGTCGGCGTTGCCACTGCCTACTATTTCTATATCACCAAGAAATCCAAACCCAAAGGTTGCTTGGACCCTAATAACTTCAAGGAATTTAAACTAGTTAAACGCACACAGCTTAGCCATAATGTAGCAAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAATTTTGGGTCTGCCGATTGGGCAGCATATCAGCTGCAGAGGAAAAGATAGCGAAGGTGGAGATGTTGTGAAACCTTACACTCCAACCACTTTGGACACAGATGTTGGATACTTTGATTTGGTCATAAAGATGTATCCACAAGGAAGGATGTCCCACCACTTCCGTGAGATGCGTGAAGGTGATTACTTGGCTGTGAAAGGTCCAAAGGGACGATTCAAGTATGCACCTAACGAAGTTGAGGCCTATGGAATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTGCAAGAGCAATACTAGAAAATCCAGTGGATCACACCAATGTGCATCTTATATATGCTAATGTAACTTATGAAGACATTCTTCTAAAGGAAGAATTGGATAGTCTTGCGGCTAGGTTTCCCACCCGCTTTACTATCTACTATGTGCTCAATCAGCCTCCTGAAGGATGGGATGGTGGTGTTGGCTTCATATCTGAGGAAATGATACGACTACACTGTCCTGCGCCATCCCCTAATGTTCGGATTTTGAGGTGCGGGCCACCCCCCATGAACAAAGCTATGGCTAAGCACCTCAACACTATTGGCCATCCTCCCCAAATGCAGTTCCTGTTCTAA 1680 46.01 MILVKLDSRIKALMVHCTIKSLVFNANRRSTRVTNNLPYSAGLFFTTRRSIRDMELAVHSPLSFSTYSSHPPNSLIPSLHRSRLFSFPPLLSPRLSFQFRPKGRSLLQPLQASRWLLAPVGDGEWKHIGSKVEMPDAFEIVSNEVTVGRLPDKADIVIPVATVSALHARIKNQEDRLLVIDLDSTNGTFIDDKRLNPGVVAAVSSGNCITFGDIHLAMFQVSKLKTVEAATKIQEESKEPISDSGTKVRGVESTPLLALLNRNHRSPVIRFFSLPLEMPTSLVPSHRPELLTVAVAVVAVGVATAYYFYITKKSKPKGCLDPNNFKEFKLVKRTQLSHNVAKFRFSLPTPTSILGLPIGQHISCRGKDSEGGDVVKPYTPTTLDTDVGYFDLVIKMYPQGRMSHHFREMREGDYLAVKGPKGRFKYAPNEVEAYGMLAGGTGITPMFQVARAILENPVDHTNVHLIYANVTYEDILLKEELDSLAARFPTRFTIYYVLNQPPEGWDGGVGFISEEMIRLHCPAPSPNVRILRCGPPPMNKAMAKHLNTIGHPPQMQFLF 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37341556 37347363 - CaPI482276_02g024930.1 Cam02g2493 122235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2493 559 CDD cyt_b5_reduct_like 328 559 - -
Cam02g2493 559 Gene3D - 128 225 - -
Cam02g2493 559 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 473 484 IPR001709 GO:0016491(InterPro)
Cam02g2493 559 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 529 537 IPR001709 GO:0016491(InterPro)
Cam02g2493 559 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 435 454 IPR001709 GO:0016491(InterPro)
Cam02g2493 559 Pfam Oxidoreductase NAD-binding domain 436 543 IPR001433 GO:0016491(InterPro)
Cam02g2493 559 CDD FHA 138 216 - -
Cam02g2493 559 SMART FHA_2 144 195 IPR000253 GO:0005515(InterPro)
Cam02g2493 559 PANTHER NADH-CYTOCHROME B5 REDUCTASE 294 559 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cam02g2493 559 FunFam NADH-cytochrome b5 reductase 318 417 - -
Cam02g2493 559 PRINTS Cytochrome B5 reductase signature 473 484 - -
Cam02g2493 559 PRINTS Cytochrome B5 reductase signature 529 537 - -
Cam02g2493 559 PRINTS Cytochrome B5 reductase signature 354 365 - -
Cam02g2493 559 PRINTS Cytochrome B5 reductase signature 412 426 - -
Cam02g2493 559 PRINTS Cytochrome B5 reductase signature 376 383 - -
Cam02g2493 559 PRINTS Cytochrome B5 reductase signature 435 454 - -
Cam02g2493 559 FunFam NADH-cytochrome b5 reductase 417 559 - -
Cam02g2493 559 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 323 427 IPR017927 GO:0016491(InterPro)
Cam02g2493 559 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 415 554 IPR039261 -
Cam02g2493 559 SUPERFAMILY SMAD/FHA domain 135 219 IPR008984 GO:0005515(InterPro)
Cam02g2493 559 ProSiteProfiles Forkhead-associated (FHA) domain profile. 145 195 IPR000253 GO:0005515(InterPro)
Cam02g2493 559 Gene3D - 417 559 IPR039261 -
Cam02g2493 559 Gene3D Translation factors 316 416 - -
Cam02g2493 559 SUPERFAMILY Riboflavin synthase domain-like 319 429 IPR017938 -
Cam02g2493 559 FunFam Predicted protein 123 225 - -
Cam02g2493 559 Pfam Oxidoreductase FAD-binding domain 328 426 IPR008333 -
Cam02g2493 559 Pfam FHA domain 145 212 IPR000253 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2493 K00326 - - csv:101219272 501.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2493 Cam-Chr2:37341556 Cam02g2500 Cam-Chr2:37372985 2.10E-181 dispersed
Cam02g2493 Cam-Chr2:37341556 Cam02g2496 Cam-Chr2:37357660 2.90E-98 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam01g0022 . 1 134 NADPH P450 reductases AT5G53560 79.1 3.2e-59 224.6
Cam05g0384 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.4e-51 199.1
Cam06g0799 . 1 133 NADPH P450 reductases AT5G53560 64.7 7.4e-48 186.8
Cam07g0188 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cam05g0384 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.8e-48 186.8
Cam06g0799 . 1 133 NADPH P450 reductases AT5G48810 60.7 1.5e-46 182.6
Cam07g0188 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Cam01g0022 . 1 134 NADPH P450 reductases AT5G48810 59.6 6.2e-45 177.2
Cam05g0384 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.2e-51 196.8
Cam06g0799 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.3e-47 183.7
Cam07g0188 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.0e-42 166.8
Cam01g0022 . 22 133 NADPH P450 reductases AT2G32720 67.0 2.0e-40 162.2
Cam08g1498 . 1 130 NADPH P450 reductases AT1G26340 55.6 1.2e-37 152.9
Cam04g0503 . 2 281 NADPH P450 reductases AT5G17770 81.8 3.9e-131 464.5
Cam10g1638 . 2 280 NADPH P450 reductases AT5G17770 77.8 9.8e-127 449.9
Cam02g2493 . 287 559 NADPH P450 reductases AT5G17770 73.3 7.1e-117 417.2
Cam02g2496 . 56 191 NADPH P450 reductases AT5G17770 75.7 1.1e-53 207.2
Cam02g2500 . 303 437 NADPH P450 reductases AT5G17770 75.6 4.2e-53 205.3
Cam01g0022 . 1 134 NADPH P450 reductases AT5G53560 79.1 3.2e-59 224.6
Cam05g0384 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.4e-51 199.1
Cam06g0799 . 1 133 NADPH P450 reductases AT5G53560 64.7 7.4e-48 186.8
Cam07g0188 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cam05g0384 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.8e-48 186.8
Cam06g0799 . 1 133 NADPH P450 reductases AT5G48810 60.7 1.5e-46 182.6
Cam07g0188 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Cam01g0022 . 1 134 NADPH P450 reductases AT5G48810 59.6 6.2e-45 177.2
Cam05g0384 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.2e-51 196.8
Cam06g0799 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.3e-47 183.7
Cam07g0188 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.0e-42 166.8
Cam01g0022 . 22 133 NADPH P450 reductases AT2G32720 67.0 2.0e-40 162.2
Cam08g1498 . 1 130 NADPH P450 reductases AT1G26340 55.6 1.2e-37 152.9
Cam04g0503 . 2 281 NADPH P450 reductases AT5G17770 81.8 3.9e-131 464.5
Cam10g1638 . 2 280 NADPH P450 reductases AT5G17770 77.8 9.8e-127 449.9
Cam02g2493 . 287 559 NADPH P450 reductases AT5G17770 73.3 7.1e-117 417.2
Cam02g2496 . 56 191 NADPH P450 reductases AT5G17770 75.7 1.1e-53 207.2
Cam02g2500 . 303 437 NADPH P450 reductases AT5G17770 75.6 4.2e-53 205.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011793 1 1 1 1 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 30