Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2500 ATGATTTTGGTCAAATTAGATTCAAGGATTAAAGCTTTAATGGTTCATTGCACGATCAAGTCACTTGTCTTCAATGCAAATAGGAGATCCACTAGAGTTACGAACAACCTACCCTACAGCGCTGGTCTTTTTTTCACTACTCGAAGAAGCATAAGAGACAAGTACAAGTGGAGTTATCCGTTAAAAGCATTAAATGGCGGCCACACAAAGGATGATGATCACAGTCCCGATTACGAACACCCAATCACTGAGCTAAGGGCTAAGCTCCTGAAATCGCTGCAGAATTTGCTCAGACATGGAACTCTTCAGTTTTCCGCCATTGTTATCGCCCCGTCTAAGCTTCCAGTTCCGGCCAAAGGGACGATCACTTCTTCAACCTCTACAAGCTTCTCGTTGGCTTCTGGCACCCGTCGGCGATGGAGAGTGGAAGCATATAGGTTCGAAAGTAGAAATGCCAGATGCTTTCGAAATTGTAATGAGGTCACTGTTGGCCGCCTTCCTGATAAAGCCGACATTGTAATTCCGGTTGCTACAGTTTCTGCTCTACATGCTCGCATCAAAAACCAAGAAGACAGGCTCTTGGTCATAGATCTAGACAGCACCAATGGGACTTTCATCGATGACAAGAGACTTAACCCTGGGGTTGTTGCTGCTGTATCATCTGGCAATTGCATTACTTTTGGTGACATCCATCTGGCCATGTTTCAGGTCTCAAAGCTGAAAACTGTTGAAGCTGCTACCAAAATCCAAGAAGAATCTAAGGAGCCAATCAGTGATTCTGGAACAAAAGTTAGGGGAGTGGAGTCAACTCCACTCCTTGCTTTGCTTAACCGCAACCATCGAAGCCCTGTGATCCGATTCTTCTCTCTTCCTTTGGAAATGCCGACCAGTTTGGTCCCTTCTCACAGACCGGAGCTTCTCACCGTCGCCGTCGCTGTGGTTGCTGTCGGCGTTGCCACTGCCTACTATTTCTATATCACCAAGAAATCCAAACCCAAAGGTTGCTTGGACCCTAATAACTTCAAGGAATTTAAACTAGTTAAACGCACACAGCTTAGCCATAATGTAGCAAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAATTTTGGGTCTGCCGATTGGGCAGCATATCAGCTGCAGAGGAAAAGATAGCGAAGGTGGAGATGTTGTGAAACCTTACACTCCAACCACTTTGGACACAGATGTTGGATACTTTGATTTGGTCATAAAGATGTATCCACAAGGAAGGATGTCCCACCACTTCCGTGAGATGCGTGAAGGTGATTACTTGGCTGTGAAAGGTCCAAAGGTATTGCTAACTTGTCCTTCAGGCTTCAACTGTGACTACATAAGTAGAATTTGA 1365 45.35 MILVKLDSRIKALMVHCTIKSLVFNANRRSTRVTNNLPYSAGLFFTTRRSIRDKYKWSYPLKALNGGHTKDDDHSPDYEHPITELRAKLLKSLQNLLRHGTLQFSAIVIAPSKLPVPAKGTITSSTSTSFSLASGTRRRWRVEAYRFESRNARCFRNCNEVTVGRLPDKADIVIPVATVSALHARIKNQEDRLLVIDLDSTNGTFIDDKRLNPGVVAAVSSGNCITFGDIHLAMFQVSKLKTVEAATKIQEESKEPISDSGTKVRGVESTPLLALLNRNHRSPVIRFFSLPLEMPTSLVPSHRPELLTVAVAVVAVGVATAYYFYITKKSKPKGCLDPNNFKEFKLVKRTQLSHNVAKFRFSLPTPTSILGLPIGQHISCRGKDSEGGDVVKPYTPTTLDTDVGYFDLVIKMYPQGRMSHHFREMREGDYLAVKGPKVLLTCPSGFNCDYISRI 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37372985 37376891 - CaPI482276_02g025000.1 Cam02g2500 122242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2500 454 SUPERFAMILY SMAD/FHA domain 157 235 IPR008984 GO:0005515(InterPro)
Cam02g2500 454 Gene3D - 134 242 - -
Cam02g2500 454 ProSiteProfiles Forkhead-associated (FHA) domain profile. 161 211 IPR000253 GO:0005515(InterPro)
Cam02g2500 454 CDD FHA 160 232 - -
Cam02g2500 454 FunFam Predicted protein 152 241 - -
Cam02g2500 454 Gene3D Translation factors 332 436 - -
Cam02g2500 454 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 339 443 IPR017927 GO:0016491(InterPro)
Cam02g2500 454 Pfam Oxidoreductase FAD-binding domain 344 437 IPR008333 -
Cam02g2500 454 Pfam FHA domain 161 228 IPR000253 GO:0005515(InterPro)
Cam02g2500 454 CDD cyt_b5_reduct_like 344 438 - -
Cam02g2500 454 PANTHER NADH-CYTOCHROME B5 REDUCTASE 310 440 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cam02g2500 454 FunFam NADH-cytochrome b5 reductase 334 433 - -
Cam02g2500 454 SMART FHA_2 160 211 IPR000253 GO:0005515(InterPro)
Cam02g2500 454 SUPERFAMILY Riboflavin synthase domain-like 335 438 IPR017938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2493 Cam-Chr2:37341556 Cam02g2500 Cam-Chr2:37372985 2.10E-181 dispersed
Cam02g2496 Cam-Chr2:37357660 Cam02g2500 Cam-Chr2:37372985 1.30E-98 dispersed
Cam02g2500 Cam-Chr2:37372985 Cam04g0503 Cam-Chr4:18339685 2.30E-53 dispersed
Cam02g2497 Cam-Chr2:37360220 Cam02g2500 Cam-Chr2:37372985 1.50E-145 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2500 K00326 - csv:101219272 251.136