Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g2500 ATGATTTTGGTCAAATTAGATTCAAGGATTAAAGCTTTAATGGTTCATTGCACGATCAAGTCACTTGTCTTCAATGCAAATAGGAGATCCACTAGAGTTACGAACAACCTACCCTACAGCGCTGGTCTTTTTTTCACTACTCGAAGAAGCATAAGAGACAAGTACAAGTGGAGTTATCCGTTAAAAGCATTAAATGGCGGCCACACAAAGGATGATGATCACAGTCCCGATTACGAACACCCAATCACTGAGCTAAGGGCTAAGCTCCTGAAATCGCTGCAGAATTTGCTCAGACATGGAACTCTTCAGTTTTCCGCCATTGTTATCGCCCCGTCTAAGCTTCCAGTTCCGGCCAAAGGGACGATCACTTCTTCAACCTCTACAAGCTTCTCGTTGGCTTCTGGCACCCGTCGGCGATGGAGAGTGGAAGCATATAGGTTCGAAAGTAGAAATGCCAGATGCTTTCGAAATTGTAATGAGGTCACTGTTGGCCGCCTTCCTGATAAAGCCGACATTGTAATTCCGGTTGCTACAGTTTCTGCTCTACATGCTCGCATCAAAAACCAAGAAGACAGGCTCTTGGTCATAGATCTAGACAGCACCAATGGGACTTTCATCGATGACAAGAGACTTAACCCTGGGGTTGTTGCTGCTGTATCATCTGGCAATTGCATTACTTTTGGTGACATCCATCTGGCCATGTTTCAGGTCTCAAAGCTGAAAACTGTTGAAGCTGCTACCAAAATCCAAGAAGAATCTAAGGAGCCAATCAGTGATTCTGGAACAAAAGTTAGGGGAGTGGAGTCAACTCCACTCCTTGCTTTGCTTAACCGCAACCATCGAAGCCCTGTGATCCGATTCTTCTCTCTTCCTTTGGAAATGCCGACCAGTTTGGTCCCTTCTCACAGACCGGAGCTTCTCACCGTCGCCGTCGCTGTGGTTGCTGTCGGCGTTGCCACTGCCTACTATTTCTATATCACCAAGAAATCCAAACCCAAAGGTTGCTTGGACCCTAATAACTTCAAGGAATTTAAACTAGTTAAACGCACACAGCTTAGCCATAATGTAGCAAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAATTTTGGGTCTGCCGATTGGGCAGCATATCAGCTGCAGAGGAAAAGATAGCGAAGGTGGAGATGTTGTGAAACCTTACACTCCAACCACTTTGGACACAGATGTTGGATACTTTGATTTGGTCATAAAGATGTATCCACAAGGAAGGATGTCCCACCACTTCCGTGAGATGCGTGAAGGTGATTACTTGGCTGTGAAAGGTCCAAAGGTATTGCTAACTTGTCCTTCAGGCTTCAACTGTGACTACATAAGTAGAATTTGA 1365 45.35 MILVKLDSRIKALMVHCTIKSLVFNANRRSTRVTNNLPYSAGLFFTTRRSIRDKYKWSYPLKALNGGHTKDDDHSPDYEHPITELRAKLLKSLQNLLRHGTLQFSAIVIAPSKLPVPAKGTITSSTSTSFSLASGTRRRWRVEAYRFESRNARCFRNCNEVTVGRLPDKADIVIPVATVSALHARIKNQEDRLLVIDLDSTNGTFIDDKRLNPGVVAAVSSGNCITFGDIHLAMFQVSKLKTVEAATKIQEESKEPISDSGTKVRGVESTPLLALLNRNHRSPVIRFFSLPLEMPTSLVPSHRPELLTVAVAVVAVGVATAYYFYITKKSKPKGCLDPNNFKEFKLVKRTQLSHNVAKFRFSLPTPTSILGLPIGQHISCRGKDSEGGDVVKPYTPTTLDTDVGYFDLVIKMYPQGRMSHHFREMREGDYLAVKGPKVLLTCPSGFNCDYISRI 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37372985 37376891 - CaPI482276_02g025000.1 Cam02g2500 122242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g2500 454 SUPERFAMILY SMAD/FHA domain 157 235 IPR008984 GO:0005515(InterPro)
Cam02g2500 454 Gene3D - 134 242 - -
Cam02g2500 454 ProSiteProfiles Forkhead-associated (FHA) domain profile. 161 211 IPR000253 GO:0005515(InterPro)
Cam02g2500 454 CDD FHA 160 232 - -
Cam02g2500 454 FunFam Predicted protein 152 241 - -
Cam02g2500 454 Gene3D Translation factors 332 436 - -
Cam02g2500 454 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 339 443 IPR017927 GO:0016491(InterPro)
Cam02g2500 454 Pfam Oxidoreductase FAD-binding domain 344 437 IPR008333 -
Cam02g2500 454 Pfam FHA domain 161 228 IPR000253 GO:0005515(InterPro)
Cam02g2500 454 CDD cyt_b5_reduct_like 344 438 - -
Cam02g2500 454 PANTHER NADH-CYTOCHROME B5 REDUCTASE 310 440 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cam02g2500 454 FunFam NADH-cytochrome b5 reductase 334 433 - -
Cam02g2500 454 SMART FHA_2 160 211 IPR000253 GO:0005515(InterPro)
Cam02g2500 454 SUPERFAMILY Riboflavin synthase domain-like 335 438 IPR017938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g2500 K00326 - - csv:101219272 251.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2493 Cam-Chr2:37341556 Cam02g2500 Cam-Chr2:37372985 2.10E-181 dispersed
Cam02g2496 Cam-Chr2:37357660 Cam02g2500 Cam-Chr2:37372985 1.30E-98 dispersed
Cam02g2500 Cam-Chr2:37372985 Cam04g0503 Cam-Chr4:18339685 2.30E-53 dispersed
Cam02g2497 Cam-Chr2:37360220 Cam02g2500 Cam-Chr2:37372985 1.50E-145 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam01g0022 . 1 134 NADPH P450 reductases AT5G53560 79.1 3.2e-59 224.6
Cam05g0384 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.4e-51 199.1
Cam06g0799 . 1 133 NADPH P450 reductases AT5G53560 64.7 7.4e-48 186.8
Cam07g0188 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cam05g0384 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.8e-48 186.8
Cam06g0799 . 1 133 NADPH P450 reductases AT5G48810 60.7 1.5e-46 182.6
Cam07g0188 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Cam01g0022 . 1 134 NADPH P450 reductases AT5G48810 59.6 6.2e-45 177.2
Cam05g0384 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.2e-51 196.8
Cam06g0799 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.3e-47 183.7
Cam07g0188 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.0e-42 166.8
Cam01g0022 . 22 133 NADPH P450 reductases AT2G32720 67.0 2.0e-40 162.2
Cam08g1498 . 1 130 NADPH P450 reductases AT1G26340 55.6 1.2e-37 152.9
Cam04g0503 . 2 281 NADPH P450 reductases AT5G17770 81.8 3.9e-131 464.5
Cam10g1638 . 2 280 NADPH P450 reductases AT5G17770 77.8 9.8e-127 449.9
Cam02g2493 . 287 559 NADPH P450 reductases AT5G17770 73.3 7.1e-117 417.2
Cam02g2496 . 56 191 NADPH P450 reductases AT5G17770 75.7 1.1e-53 207.2
Cam02g2500 . 303 437 NADPH P450 reductases AT5G17770 75.6 4.2e-53 205.3
Cam01g0022 . 1 134 NADPH P450 reductases AT5G53560 79.1 3.2e-59 224.6
Cam05g0384 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.4e-51 199.1
Cam06g0799 . 1 133 NADPH P450 reductases AT5G53560 64.7 7.4e-48 186.8
Cam07g0188 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cam05g0384 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.8e-48 186.8
Cam06g0799 . 1 133 NADPH P450 reductases AT5G48810 60.7 1.5e-46 182.6
Cam07g0188 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Cam01g0022 . 1 134 NADPH P450 reductases AT5G48810 59.6 6.2e-45 177.2
Cam05g0384 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.2e-51 196.8
Cam06g0799 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.3e-47 183.7
Cam07g0188 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.0e-42 166.8
Cam01g0022 . 22 133 NADPH P450 reductases AT2G32720 67.0 2.0e-40 162.2
Cam08g1498 . 1 130 NADPH P450 reductases AT1G26340 55.6 1.2e-37 152.9
Cam04g0503 . 2 281 NADPH P450 reductases AT5G17770 81.8 3.9e-131 464.5
Cam10g1638 . 2 280 NADPH P450 reductases AT5G17770 77.8 9.8e-127 449.9
Cam02g2493 . 287 559 NADPH P450 reductases AT5G17770 73.3 7.1e-117 417.2
Cam02g2496 . 56 191 NADPH P450 reductases AT5G17770 75.7 1.1e-53 207.2
Cam02g2500 . 303 437 NADPH P450 reductases AT5G17770 75.6 4.2e-53 205.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011793 1 1 1 1 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 30