Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0002 ATGTGTCGATCACATGAGGAATGGGCTTATGTAGCCCTTCTTCTCCTCTGCTTCTCCTCGTCCTTACTAATTGTCGGTGCAGCAGAGATGGTTACCCATCCTTCTGAAGTGGACGCTTTGCTAGTCATCAAAAGAAGTTTGATCGACCCTAATGGAAATCTGAGCAACTGGAACAAAGGAGACCCTTGTAATTCAAACTGGACTGGTGTTCTGTGCTACAATACCACATTGGATGATAACTATCTACATGTTGCTGAATTGCAACTTCTAAATATGAGTTTATCAGGAAATTTGTCACCTGCGCTTGGTCGTTTATCTTACCTGAAAGTTTTGGACTTTATGTGGAATGAGATAAATGGGGAAATACCAAGAGAGATAGGCAACCTAACATCCTTAGAACTGTTGCTTCTGAACGGGAACCAGTTGTCAGGTCCATTACCTGAAGATCTTGGTAATCTTCTACATTTGGACAGAATACAGATTGACCAGAACCATATATCAGGACCAATACCCAAGTCTTTTGCAAACTTAAAAGCAACAAAGCATTTTCACATGAATAACAACTCTATCAGTGGTGAAATCCCATCTGAGCTATCTGGATTGCCCAATCTTGTCCACTTCCTTCTTGACAATAACAACTTATCGGGGAAACTTCCACCTGAGTTGTTTCAATTGCCAAACTTAGAAATACTTCAACTTGACAACAACAACTTTAGTGGGACCACAATACCAGATTCTTATGGAAATATGACTAAATTGCTGAAATTGAGTCTAAGGAACTGTACCTTGCAAGGATCCATTCCAGATCTGAGCAGAATAAAGAACCTCGGTTATCTAGATCTAAGTTCCAATCAATTAAGTGGATTGATACCACGAAGTAAACTCTCTGAGAATATCACAACCATCATTTTATCCAACAACCATCTTACTGGCACCATACCATCCAGCCTTTCGGATCTACCACATCTTCAGAAATTGTCAGTTGCAAATAATTCATTGAACGGCTCTGTTCCATCCACCATATGGCAAAGCAGGACGCTCAATCCTCTGGACAGCCTTACAATAGAGTTGCAGAACAATAATTTTTCAAATATTGTGGGAAGCATCCATCTTCCTCTGAATGTTTCTGTCTGGCTTCATGGAAATCCTGCTTGTGCTAATAACAGCCTGCTGGACTTTTGTGGATCTGAGAGTGAGGATATAATTGACGTACCAACAAATAACACTCTTGGCTGTTCTGGCTCAATATGCCCACCTTCTTACGAATGTTACGCGGCGAAATGTCCCTCATCTTGTCTCTGTTCTGCACCTCTTCTAATTGGATATCGTTTGAAAAGTCCTGGATTCTCACGTTTCAGTCCATATCAACAAATGTTTGAGGAGTATCTGACCAGTGGTCTTAAGGTACATCTTGAACAGTTGGACATTGGTTCTCCTGTGTGGGAAAAAGGACCTCGATTAAGAATGAACCTGAAGCTTTTCCCTCTGTATGTTGCTGATAGCAATAGTTCTCACATGTTCAATGACAGCGAGGTTTTACGAATTGTTTCCAAGTTTACAAATTGGAAAATTCAAGATAGCGATATATTTGGACCATATGAACTTCTCAGCTTGTCAATATCAGATGTTTATAAGAACGTATTTGTCACACCATCATCTGATTCTACTATAAGTAGAGGGGCATTGGCTGGAATAATATTAGGAGCAATTGCTGGCGGAGCAATGTTATCTGCAGTTGTTTTTATTTTTATTATCAGATCACGTGTGAGAGGCCACCACATCTCAAGAAGGCGTCATCTGTCAAAAACCTCCATAAAGATTGAGGGCGTAAAGGAATTTGGTTACCGTGCAATGGCCCTAGCTACAAACAATTTTCATTATTCCACGGTAGTTGGTCAAGGTGGTTATGGAAAGGTTTACAAAGGAATTCTAGCAGATAGCACAACTGTTGCTATCAAACGTGCACAGGATGGCTCACTACAGGGTGAAAAAGAGTTCCTAACTGAAATACAATTATTGTCAAGGTTACACCACCGAAATCTTGTGGCTTTGATTGGCTATTGCGATGAGGAAGGGGAGCAGATGTTGGCTTATGAGTTTATGTCAAATGGCACGCTGAGGGATCACCTTTCTGTCAATTCTGCAGAACCTTTGAGTTTTGCCACAAGATTAAAAGCTGCTCTGGGTGCAGCTAAGGGAATTCTGTACCTGCACACGGAAGCTGATCCTCCAATATTCCACCGAGATATCAAGTCCAGCAACATATTATTAGACTCTAAATATGTAGCAAAGGTTGCTGATTTTGGACTTTCACGACTTGCACCTCTACCCGATGCAGAAGGCGATGTGCCTGCTCATGTATCAACAGTAGTAAAAGGGACACCGGGTTATCTTGATCCAGAGTACTTTTTGACTCATAAATTGACAGATAAGAGTGATGTTTATAGCCTTGGGGTTGTGTTTTTGGAGCTTTTGACTGGGAGGCACCCAATCTCACATGGCAAGAACATCGTTAGGGAGGTTAACGGTGCATATCAGTCTGGAAAAATCTTCTCAATAATCGATGGTCGACTGGGATCTTATCCCGCTGAATGCGTAGAAAAATTTGTGACATTGGCGTTGAAGTGTTGCCAAGAAGATACGGATGCACGCCCTTCAATGGCTGAAGTTGTTCGAACGCTTGAAAGTATCTGGCTTATGCTGCCCGAGTCTGATACGAAAATTGCAGAGCCTTTGATCACGGATGTCATAAAAGTGACTACCCCCCCATCTTCATCATCCAACATGAACAACTATTACATATCAGAAGTCTCTGGCAGTGACCTCGTAAGTGGAGTAACTCCGACCATCACGCCCAGATAG 2862 41.68 MCRSHEEWAYVALLLLCFSSSLLIVGAAEMVTHPSEVDALLVIKRSLIDPNGNLSNWNKGDPCNSNWTGVLCYNTTLDDNYLHVAELQLLNMSLSGNLSPALGRLSYLKVLDFMWNEINGEIPREIGNLTSLELLLLNGNQLSGPLPEDLGNLLHLDRIQIDQNHISGPIPKSFANLKATKHFHMNNNSISGEIPSELSGLPNLVHFLLDNNNLSGKLPPELFQLPNLEILQLDNNNFSGTTIPDSYGNMTKLLKLSLRNCTLQGSIPDLSRIKNLGYLDLSSNQLSGLIPRSKLSENITTIILSNNHLTGTIPSSLSDLPHLQKLSVANNSLNGSVPSTIWQSRTLNPLDSLTIELQNNNFSNIVGSIHLPLNVSVWLHGNPACANNSLLDFCGSESEDIIDVPTNNTLGCSGSICPPSYECYAAKCPSSCLCSAPLLIGYRLKSPGFSRFSPYQQMFEEYLTSGLKVHLEQLDIGSPVWEKGPRLRMNLKLFPLYVADSNSSHMFNDSEVLRIVSKFTNWKIQDSDIFGPYELLSLSISDVYKNVFVTPSSDSTISRGALAGIILGAIAGGAMLSAVVFIFIIRSRVRGHHISRRRHLSKTSIKIEGVKEFGYRAMALATNNFHYSTVVGQGGYGKVYKGILADSTTVAIKRAQDGSLQGEKEFLTEIQLLSRLHHRNLVALIGYCDEEGEQMLAYEFMSNGTLRDHLSVNSAEPLSFATRLKAALGAAKGILYLHTEADPPIFHRDIKSSNILLDSKYVAKVADFGLSRLAPLPDAEGDVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGRHPISHGKNIVREVNGAYQSGKIFSIIDGRLGSYPAECVEKFVTLALKCCQEDTDARPSMAEVVRTLESIWLMLPESDTKIAEPLITDVIKVTTPPSSSSNMNNYYISEVSGSDLVSGVTPTITPR 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1025178 1045705 - CaPI482276_03g000020.1 Cam03g0002 122268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0002 953 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 34 195 - -
Cam03g0002 953 FunFam receptor-like protein kinase FERONIA 589 700 - -
Cam03g0002 953 CDD STKc_IRAK 631 897 - -
Cam03g0002 953 Pfam Leucine Rich Repeat 298 320 IPR001611 GO:0005515(InterPro)
Cam03g0002 953 Pfam Leucine Rich Repeat 275 292 IPR001611 GO:0005515(InterPro)
Cam03g0002 953 Pfam Leucine Rich Repeat 227 249 IPR001611 GO:0005515(InterPro)
Cam03g0002 953 Pfam Leucine Rich Repeat 131 153 IPR001611 GO:0005515(InterPro)
Cam03g0002 953 Gene3D Ribonuclease Inhibitor 31 295 IPR032675 -
Cam03g0002 953 ProSiteProfiles Protein kinase domain profile. 625 899 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0002 953 ProSitePatterns Protein kinases ATP-binding region signature. 631 653 IPR017441 GO:0005524(InterPro)
Cam03g0002 953 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 701 910 - -
Cam03g0002 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g0002 953 SMART LRR_typ_2 273 298 IPR003591 -
Cam03g0002 953 SMART LRR_typ_2 320 344 IPR003591 -
Cam03g0002 953 SMART LRR_typ_2 129 153 IPR003591 -
Cam03g0002 953 SMART LRR_typ_2 201 225 IPR003591 -
Cam03g0002 953 PANTHER RECEPTOR-LIKE PROTEIN 55 54 895 - -
Cam03g0002 953 SUPERFAMILY L domain-like 49 411 - -
Cam03g0002 953 SUPERFAMILY Protein kinase-like (PK-like) 611 926 IPR011009 -
Cam03g0002 953 ProSiteProfiles Leucine-rich repeat profile. 275 296 IPR001611 GO:0005515(InterPro)
Cam03g0002 953 Gene3D Transferase(Phosphotransferase) domain 1 701 907 - -
Cam03g0002 953 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Cam03g0002 953 SMART serkin_6 625 899 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0002 953 Pfam Protein kinase domain 626 892 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0002 953 Gene3D Phosphorylase Kinase; domain 1 596 700 - -
Cam03g0002 953 Pfam Leucine rich repeat 155 214 IPR001611 GO:0005515(InterPro)
Cam03g0002 953 Gene3D Ribonuclease Inhibitor 296 383 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0002 Cam-Chr3:1025178 Cam04g0624 Cam-Chr4:20231248 5.20E-180 dispersed
Cam11g1152 Cam-Chr11:22609819 Cam03g0002 Cam-Chr3:1025178 3.40E-50 dispersed
Cam03g0002 Cam-Chr3:1025178 Cam10g2256 Cam-Chr10:35750819 1.20E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85018 PF00069 Pkinase 2.10E-47 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0002 - - - 0.0