Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam03g0015 | ATGGCCTCCTCTTCCGGGAGCTTAGACACCTCTGCTAATTCTCATCCCTCTTTCACTTTCTCTACTCATCCTTTTATGACTTCTTCTTACTCTGACCTTCTAGCCTCCGGCAACAACCATCCTCCTTCCTCCGTCGCACCCCACGCCGTTCTCCGGGGTTCCGGCACCGGAGTTCCTAAATTCAAATCCCTCCCTCCTCCTTCTCTCCCTCTCTCTCCTCCTCCCCTCTCTCCTTCTTCCTTTTTCGCTATTCCTCCTGGCTTGAGTCCCGCCGAGCTTCTTGATTCCCCTGTTCTTCTCAGTGCTTCTCATGTTTTGCCGTCGCCGACCACTGGGAGTTTCCCGTCTCAGTCGTTGAATTGGAAGAGCAATTCTGGGTATAATCAGCAGAGCATTAAGGAAGAAAACAAATATCTGTCTAATTTCTCATTTCAAACTCAATCGTTAAAGCTGCCGCCGACGTCTTTTCAGCCTTCATCCACCACAGCTCCCACGACTCAGGGATGGACTTTTCAAGAACAGCGCAAGAAAGAGGATGGTTTTTCGTCGGAGAAGAATATGGTGAAGCCGGAGTTCGGATCGATGCGGAGCTTCTCACCGGAATATGGGGTTGTTCAAAACCAAAACCAAACCGATGGCAGCGGGGAGTTGCAGTCTGATTACGGCAACAATTACCCTCAACAATCTCAGACGGTGAATCGAAGATCGGACGACGGCTACAACTGGAGAAAATACGGCCAAAAACAGGTTAAAGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACTTTCCCCAATTGCCCAACAAAGAAAAAGGTCGAAAGATCCTTAGATGGACAGATCACGGAGATCGTTTACAAAGGCAGCCATAACCATCCAAAGCCCCAATCCACAAGGAGGTCGTCGCTGTCGTCCGCCGGTTCTTCCCACACCATGGTGGCTTCGAATCAGGCCACCAGCGAGATGGCGGACCAGTCATTTACAACCCAAGGCAGCGGCCAATTTGATGGCGTTGCAACGCCGGAGAATTCCTCGATTTCAATTGGCGACGACGACTTCGATCGGAGCTCGCAAAAGAGCAAATCCGGAGGGGACGATTTTGATGAGGACGAACCAGAGGCTAAGAGATGGCGAAGAGAAGGTGACAACAATGAAGGTATTTCGGCGGTCGGTAGCCGGACGGTGAGAGAGCCGAGAGTCGTCGTCCAAACCACCAGCGACATCGACATTCTCGACGATGGTTACCGGTGGAGGAAGTATGGTCAGAAAGTTGTGAAGGGAAACCCAAATCCAAGGAGTTACTACAAATGTACAAATCCAGGATGTCCAGTAAGAAAGCATGTGGAGAGAGCTTCACATGATCTAAGAGCAGTGATCACAACTTATGAAGGGAAGCACAACCACGATGTTCCACCGGCACGTGGGAGTGGAAGCCATTCCCTCAGCCGTCCATTCCCCAACAACGAAGCTCCGGCAACTGCGATCCGGCCATCGGCGTTGACCCATCAGTCAAACAACGGGGGGCATCTGCAGGGTCTGAGGCTGCAGCAATCTTCAGATTCCCAAGCAGCATTCACAGTGGAAATGGTGCAAAATGGGAATGGATTTTCATTCCCAGAATTTGGAAACTCAATGGGAATGGGTTCCTACATCAACCAAACACAGCCCAATGATAATTTGTTCACCAGAGCCAAAGAAGAGCCAAGAGATCATGACATGTTCATCCAATCTCTCCTATGTTAG | 1743 | 50.14 | MASSSGSLDTSANSHPSFTFSTHPFMTSSYSDLLASGNNHPPSSVAPHAVLRGSGTGVPKFKSLPPPSLPLSPPPLSPSSFFAIPPGLSPAELLDSPVLLSASHVLPSPTTGSFPSQSLNWKSNSGYNQQSIKEENKYLSNFSFQTQSLKLPPTSFQPSSTTAPTTQGWTFQEQRKKEDGFSSEKNMVKPEFGSMRSFSPEYGVVQNQNQTDGSGELQSDYGNNYPQQSQTVNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSLSSAGSSHTMVASNQATSEMADQSFTTQGSGQFDGVATPENSSISIGDDDFDRSSQKSKSGGDDFDEDEPEAKRWRREGDNNEGISAVGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPPARGSGSHSLSRPFPNNEAPATAIRPSALTHQSNNGGHLQGLRLQQSSDSQAAFTVEMVQNGNGFSFPEFGNSMGMGSYINQTQPNDNLFTRAKEEPRDHDMFIQSLLC | 580 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 1142483 | 1144772 | - | CaPI482276_03g000150.1 | Cam03g0015 | 122281 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam03g0015 | 580 | Pfam | WRKY DNA -binding domain | 237 | 293 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam03g0015 | 580 | Pfam | WRKY DNA -binding domain | 412 | 469 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam03g0015 | 580 | MobiDBLite | consensus disorder prediction | 149 | 171 | - | - | |
| Cam03g0015 | 580 | SUPERFAMILY | WRKY DNA-binding domain | 235 | 295 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam03g0015 | 580 | Gene3D | WRKY domain | 398 | 464 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam03g0015 | 580 | MobiDBLite | consensus disorder prediction | 200 | 236 | - | - | |
| Cam03g0015 | 580 | FunFam | WRKY transcription factor | 227 | 296 | - | - | |
| Cam03g0015 | 580 | ProSiteProfiles | WRKY domain profile. | 237 | 295 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam03g0015 | 580 | MobiDBLite | consensus disorder prediction | 286 | 392 | - | - | |
| Cam03g0015 | 580 | MobiDBLite | consensus disorder prediction | 462 | 492 | - | - | |
| Cam03g0015 | 580 | MobiDBLite | consensus disorder prediction | 149 | 241 | - | - | |
| Cam03g0015 | 580 | SMART | WRKY_cls | 236 | 294 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam03g0015 | 580 | SMART | WRKY_cls | 411 | 470 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam03g0015 | 580 | SUPERFAMILY | WRKY DNA-binding domain | 403 | 471 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam03g0015 | 580 | ProSiteProfiles | WRKY domain profile. | 406 | 471 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam03g0015 | 580 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 166 | 488 | IPR044810 | GO:0003700(InterPro) | |
| Cam03g0015 | 580 | MobiDBLite | consensus disorder prediction | 348 | 383 | - | - | |
| Cam03g0015 | 580 | MobiDBLite | consensus disorder prediction | 31 | 76 | - | - | |
| Cam03g0015 | 580 | Gene3D | WRKY domain | 223 | 296 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cam03g0015 | 580 | MobiDBLite | consensus disorder prediction | 291 | 347 | - | - | |
| Cam03g0015 | 580 | FunFam | WRKY transcription factor 33 | 398 | 464 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam02g1987 | Cam-Chr2:32947815 | Cam03g0015 | Cam-Chr3:1142483 | 3.20E-79 | dispersed | |
| Cam03g0015 | Cam-Chr3:1142483 | Cam10g2212 | Cam-Chr10:35470895 | 6.20E-91 | dispersed | |
| Cam03g0015 | Cam-Chr3:1142483 | Cam05g2592 | Cam-Chr5:33567905 | 5.60E-68 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 51609 | PF03106 | WRKY | 3.60E-25 | CL0274 | Cam | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam03g0015 | K13424 | - | csv:101207158 | 1051.2 |