Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0045 ATGGTTGACAACGGCGAGGAGAAGTTGCTGGCTATGGCTCGCCACATAGCCAAGACCATGGGTCGCAACGAGTCCATGGCTGATGATATTCTTCAGATTTTTTCCAATTTTGATGCTAGGTTTTCCCTTGATAAGTTGTCTGATAAACCCGATGAGCTTGACCCCAGAGCCCCCCCCGCTTTGCAACGCTCTCTCAAGTCTTTGGACCGCCGGATCTCCCAATACTTGGCTGCCGACCACCCCATTTGGGCTGACTCCGCTGATTCCTCTGCTTTTCTTGACGCTATCGATGAGTTGATGGTTATCATTAGGGACTGGGCTCCTATGGCTAGGGATAAGTCTGTTACCGCCTACCTTGCTCGCGCCGACGATCTTATGCAGCAGGCCATGTTCCGTGTCGACCAAGAGTTCCGGTCGTTGATGGACCGTGGAGGTGAGTCTTTTGAATTGACTCGCCATTTCAGGAACGGCGAGTCAACGGGGGATTTCTGCTTCGATTCTGAGGAAGATGAGGAAGGAATTCTTGGCGATGGCGATGCTCTCCAGATCCCTGTGGCGCAGCCGGTGACGGACTACAACATCGTTATCGATGCACTTCCGTCGGGGACTATCAGCGATCTTCATGAAATAGCGAAGCGTATGGTAGCGGCTGGGTTCGAGAAAGAGTGTTCACACGCTTACAGTAGCTGCAGGAGGGAGTTTTTGGAGGAGAGTCTTTCTAGGTTGGGGTTACAGAAGCTGAGCATCGATGAAGTTCAAAAGATGCAATGGCATGACCTTGAAGAGGAGATTGAACGCTGGATGAAAGCGATTACTGTCTCCCTTCGAATTCTCTTCCCAAGTGAACGACGCCTCTGCGAACGCGTCTTCGTCGGCCTCTCCTCCACCGCCGATCTTTCTTTCATGGAGGTCTGCCGTGGATCGACTATCCAGCTATTGAATTTTGCAGATGCGGTAGCAATTGGCTCCCGCGCGCCGGAACGACTTTTCAAAATCCTCGATATGTTCGAGACCTTGAGAGACTTGATGCCAGAATTCGATTCAGTATTTTCAGATCAGTACTGCTTATTGCTTAGAAATGAAGCAATTACAATCTGGAAAAGGTTAGGCGGAACAATCAAAGGGATCTTCATGGAGCTTGAGAATTTGATCCGCCGTGATCCGGCTAAAACTCCGGTCCCGGGGGGCGGCCTTCATCCAATCACTCGATATGTGATGAATTACCTTAGAGCAGCCTGTAAATCTCGGCAGACTTTAGAGCAAGTTTTCGAAGAAGCTGCTCTTCCCTCTAAGGATTACACTAAGCTCGAGGACAGAGCAGCAGCATCGTCTTCCTTATCAGTTCAAATGGACTGGATAATGGAGCTTTTAGAGAGCAATTTAGAGGCGAAATCGAAGATATACAAGGATCTTTCCTTAAGCTCTGTGTTTCTGATGAACAATGGGCGATACATTGTTCAGAAAGTGAAAGACAGTGAATTAGGGTCAGTTTTAGGCGAGGATTGGATTCGAAAACACTCGGTTAAAAACCGGCAATACCTCGGAAACTACCTGAAAAGCTCATGGAGCAAGGTGGTCGGAGCATTGAAAATGGACAGTGGCACTATAGCTCCGGCTGTGATGAAGGAGAAGCTCCAATCATTCAATATGCAATTTGAAGAAATCTGCCAAACCCAATCCACATGGGTGATATTTGAGCATCAGCTTAGAGAAGAAGCAAGAATCTCAGTTGCCAAAATTCTGTTGCCAGCATATCAAAAGTTCATCGGCAGATACCAGAGTTTGCCGGAGTTGGCAAAGCGTACAGACCGGTATTTGAAGTACACGGCGGAGGATATGGAGGCTCGAATCACCGAGCTGTTTGAAGGCGGCGGCGGCGGCGGCGGCTCAGGCAGTGGAAGGAGGTAA 1908 49.06 MVDNGEEKLLAMARHIAKTMGRNESMADDILQIFSNFDARFSLDKLSDKPDELDPRAPPALQRSLKSLDRRISQYLAADHPIWADSADSSAFLDAIDELMVIIRDWAPMARDKSVTAYLARADDLMQQAMFRVDQEFRSLMDRGGESFELTRHFRNGESTGDFCFDSEEDEEGILGDGDALQIPVAQPVTDYNIVIDALPSGTISDLHEIAKRMVAAGFEKECSHAYSSCRREFLEESLSRLGLQKLSIDEVQKMQWHDLEEEIERWMKAITVSLRILFPSERRLCERVFVGLSSTADLSFMEVCRGSTIQLLNFADAVAIGSRAPERLFKILDMFETLRDLMPEFDSVFSDQYCLLLRNEAITIWKRLGGTIKGIFMELENLIRRDPAKTPVPGGGLHPITRYVMNYLRAACKSRQTLEQVFEEAALPSKDYTKLEDRAAASSSLSVQMDWIMELLESNLEAKSKIYKDLSLSSVFLMNNGRYIVQKVKDSELGSVLGEDWIRKHSVKNRQYLGNYLKSSWSKVVGALKMDSGTIAPAVMKEKLQSFNMQFEEICQTQSTWVIFEHQLREEARISVAKILLPAYQKFIGRYQSLPELAKRTDRYLKYTAEDMEARITELFEGGGGGGGSGSGRR 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1378952 1380859 + CaPI482276_03g000450.1 Cam03g0045 122311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0045 635 Pfam Exo70 exocyst complex subunit C-terminal 266 618 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cam03g0045 635 PANTHER EXOCYST COMPLEX PROTEIN EXO70 63 623 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cam03g0045 635 FunFam Exocyst subunit Exo70 family protein 76 627 - -
Cam03g0045 635 Gene3D Exocyst complex component Exo70 82 626 - -
Cam03g0045 635 SUPERFAMILY Cullin repeat-like 83 622 IPR016159 -
Cam03g0045 635 Pfam Exocyst complex component Exo70 N-terminal 86 142 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0045 K07195 - - csv:101204511 1158.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0045 Cam-Chr3:1378952 Cam03g1366 Cam-Chr3:27853344 3.90E-107 dispersed
Cam03g0045 Cam-Chr3:1378952 Cam03g0199 Cam-Chr3:2957541 5.20E-75 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g2389 . 12 653 EXO70 exocyst subunit family AT5G03540 75.9 1.0e-283 972.6
Cam01g1543 . 1 638 EXO70 exocyst subunit family AT5G03540 71.3 2.0e-266 915.2
Cam01g1543 . 1 638 EXO70 exocyst subunit family AT5G52340 80.3 3.7e-299 1023.8
Cam05g2389 . 14 653 EXO70 exocyst subunit family AT5G52340 74.4 1.5e-271 932.2
Cam01g1543 . 145 631 EXO70 exocyst subunit family AT5G52350 63.7 2.8e-176 615.5
Cam05g2389 . 149 653 EXO70 exocyst subunit family AT5G52350 59.1 2.9e-165 578.9
Cam03g0045 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 3.6e-246 847.8
Cam03g0045 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 1.0e-173 607.1
Cam07g1557 . 60 673 EXO70 exocyst subunit family AT5G13150 53.5 4.5e-175 611.7
Cam01g0878 . 111 722 EXO70 exocyst subunit family AT5G13990 54.7 2.6e-189 659.1
Cam07g1113 . 9 609 EXO70 exocyst subunit family AT1G72470 65.2 4.6e-217 751.1
Cam07g1113 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 1.3e-208 723.0
Cam07g1113 . 9 608 EXO70 exocyst subunit family AT3G14090 64.4 8.3e-219 756.9
Cam03g1366 . 27 664 EXO70 exocyst subunit family AT5G50380 62.0 3.5e-226 781.6
Cam03g0370 . 18 630 EXO70 exocyst subunit family AT5G50380 60.9 6.3e-212 734.2
Cam08g1718 . 11 682 EXO70 exocyst subunit family AT4G31540 73.7 2.1e-295 1011.5
Cam10g2045 . 35 630 EXO70 exocyst subunit family AT3G09520 56.1 5.0e-179 624.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009102 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 0 1 33