Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0061 ATGGCGAAAACGGCGGCGCTTTCGTGGACGCGAAGTAAGTGTCTCATCGGAAAGGGCTCCTTTGGAACAGTGAGTGTCGGAATCGGGAAATCGGACGGTCGGATTTTCGCGGTGAAATCTGTGGAGCAGAGTAATGGATTTCGGCGACAAATTGAGTGTTTAGAGAACGAAATTCGGATTCTCCGATCCTTGAATTCGCCTTACGTTGTGGGGTTTCTTGGCGATGATGTTTCTGTTGAGTCTCCCACGACGTGGTTTCGAAATCTGCACATGGAGTATTTGCCAGGTGGCACCGTTGCCGACGATCCCACCGGGGCCGGCGGTGAGAAGCTTTTACGGGAGAGAACATGGTGCCTCGTTTCGGCTCTGAGTTACATTCACTCGAAAGGAATTGTCCATTGTGATGTTAAAGGGAGGAACATTTTGATCGGATTGAATCCCGGGGTCGTGAAATTGGCTGATTTCGGCTCTGCAATTGAGCTTTCAGGCGCCGACGACAGGTGTCGGGGTTCGGTTGCGCCACGTGGGAGTCCACTGTGGATGGCGCCGGAGGTGGTCCGGGGAGAATTTCAGGGGCCGGAATCGGATGTTTGGTCCGTTGGGTGCACGGTCATTGAAATGGTCACCGGAAAACCGGCGTGGGAAGATTTCGGAGCCGATACGCTGAGTAGAATCGGATTTTCGGATGATTTGCCGGAGTTTCCAACACGGTTGTCAGAAGTCGGCCGGGATTTTCTCCGGAAGTGTCTCAGAAGGAATCCTAGTGAACGGTGGAGCTGTGATCGGCTGCTGCAGCATCCATTTCTGGCGGCGGCGGCCTCGCCGGAGATTGCTGTAGAGAATTCCCCCAGGTGTGTGCTTGACTGGGTCAACGGCAGTTTCTCCGACGAAGAGGAGGAAGTTCAGATCGCCAACGAAACCTCCGGCTCCGGTGGGCAGGAAAGTGAGATCTCTGCTAAGGAAAGAATTGGGAAATTGAGTACGAGTGAATGGCCGAATTGGGAATCGGACGGTTGGTCGCCGGTGAGAAGATGTTGCAGCGAAGCGGCGGCGGAGACGGAGGCGAGCGGTCGGGAAGAAGAAAAAGAAGAGAGAGGGGCAGAATGGGAATATGTAAATTTGAGAGGGGTAGAAGGGGGAATGGAGGGGACAAGTTCGGAATATTCGGAGTTTGTAACAGACAATCACGGAAAATTGGGTGCCGAATATTCAAATCCTGGCGGTAAGAAAATTTCGGAGCGGCCACGTAATAATTACGGCGGCGGTGACGGTGACGGTGGCGTTAGCGGTGGATTAAGTTTCCGGCGGTGTGGGTTTGAAGGATGTGCAATTACAACAATAACCTCGTGGATATACTCAATTGAATTGATATTATGTTATTATTGGAAAATATTAATGAAGCAATTAGTGTTATTTGGGAATTACACTTTATTACCTTTCTTTTCTGCCTAA 1452 51.24 MAKTAALSWTRSKCLIGKGSFGTVSVGIGKSDGRIFAVKSVEQSNGFRRQIECLENEIRILRSLNSPYVVGFLGDDVSVESPTTWFRNLHMEYLPGGTVADDPTGAGGEKLLRERTWCLVSALSYIHSKGIVHCDVKGRNILIGLNPGVVKLADFGSAIELSGADDRCRGSVAPRGSPLWMAPEVVRGEFQGPESDVWSVGCTVIEMVTGKPAWEDFGADTLSRIGFSDDLPEFPTRLSEVGRDFLRKCLRRNPSERWSCDRLLQHPFLAAAASPEIAVENSPRCVLDWVNGSFSDEEEEVQIANETSGSGGQESEISAKERIGKLSTSEWPNWESDGWSPVRRCCSEAAAETEASGREEEKEERGAEWEYVNLRGVEGGMEGTSSEYSEFVTDNHGKLGAEYSNPGGKKISERPRNNYGGGDGDGGVSGGLSFRRCGFEGCAITTITSWIYSIELILCYYWKILMKQLVLFGNYTLLPFFSA 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1552085 1553536 - CaPI482276_03g000610.1 Cam03g0061 122327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0061 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g0061 483 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 270 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cam03g0061 483 SUPERFAMILY Protein kinase-like (PK-like) 14 281 IPR011009 -
Cam03g0061 483 Gene3D Transferase(Phosphotransferase) domain 1 5 322 - -
Cam03g0061 483 FunFam Serine threonine protein kinase putative 7 327 - -
Cam03g0061 483 SMART serkin_6 10 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0061 483 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524(InterPro)
Cam03g0061 483 MobiDBLite consensus disorder prediction 402 424 - -
Cam03g0061 483 ProSiteProfiles Protein kinase domain profile. 10 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0061 483 MobiDBLite consensus disorder prediction 304 335 - -
Cam03g0061 483 Pfam Protein kinase domain 15 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0061 483 CDD STKc_MAPKKK 8 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0216 Cam-Chr2:3088457 Cam03g0061 Cam-Chr3:1552085 4.80E-55 dispersed
Cam03g0061 Cam-Chr3:1552085 Cam09g1076 Cam-Chr9:11121031 2.50E-53 dispersed
Cam03g0061 Cam-Chr3:1552085 Cam02g0934 Cam-Chr2:13357114 1.30E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85019 PF00069 Pkinase 3.80E-52 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0061 - - - 0.0