Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0076 ATGGGTTTGAATGAGCCGCTGGTATTTGGGGATTTGGAGATCAATGGAGGTGGCGAGACGGCGGCGGTTGCGGTGGTGAGGTTTGGGTTGGTTAGAGATTTGTGGGGAAATTTGGTGAAAGTGGTTTTTGGAACGAAGCTTGCTCTGCTTTTTCCGGCCATCCCTTTGGCTATGGCGGCGGAAATTTACAGCTTTGGAAGAACATGGACATTTGGTTTAAGCTTACTTGGATTGGCCCCACTTGCAGAACGTGTCAGTTTTCTGACTGAGCAGATTGCATGCTTCACGGGGCCCACAGTTGGTGGGCTAGTGAATGCAACATGTGGGAATGCAACAGAGTTAATAATAGCAATATTTGCTTTGCATCAAAATAAAGTTCATGTCTTGAAGTTTTCTCTTTTGGGTTCTATTCTCTCCAATTTACTTCTAGTCCTTGGCACATCCCTTTTCTTTGGTGGCTTATCCAATCTCAACAAGCAACAAACTTTCAACCCAAAAGTGGCCAATGTGAGCTCTGTGGTGTTGCTGTTGGGATTGGTATGCCAAATGCTGCCATTGATGTTCACATTTGCATCACCCAAAATCTCAACAAATTTTTCTTTACTTCAATTATCAAGAACTTGCAGCCTTCTAATGCTCACAGCATACATTGCTTATGTCTTCTTCCAGTTGAAAACCCATCACCAATTTTTTGGTCTACCACAGGAGGAAGAGGATGAAGAAGAAAGGGCAGTGGTTGGATTTTGGAGCTCATTTGGTTGGTTGGTTGGTATGACCATAGTCATAGCTATTTTATCACAATACATTGTGGCAACAATTGAGGATGCATCAAAATCATGGGGAGTTTCAGTGAGCTTTATAAGCATAATTTTGCTACCAATTATGGGCAATGCAGCAGAACATGCTGGATCAATTATTTTTGCTGTCAAGAACAAATTGGATATAACACTAGGGATAGCCTTGGGATCTGCAGCCCAAATTTCCCTATTTGTGGTGCCCTTGAGTGTGATTATTGGATGGTGCATGGGCATCAAAATGGATCTTGATTTTGGTATACTTGAAACAACTTCTCTTGCCTTTACCATCATCTTGACTATCTTCACCTTACAGGATGGAAGTTCACATTACATCAAAGGAATGGTACTTGTCCTATGTTATGTAGCAATTTCTTCCTGTTTTTTCTGTTCATAA 1191 41.73 MGLNEPLVFGDLEINGGGETAAVAVVRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAMAAEIYSFGRTWTFGLSLLGLAPLAERVSFLTEQIACFTGPTVGGLVNATCGNATELIIAIFALHQNKVHVLKFSLLGSILSNLLLVLGTSLFFGGLSNLNKQQTFNPKVANVSSVVLLLGLVCQMLPLMFTFASPKISTNFSLLQLSRTCSLLMLTAYIAYVFFQLKTHHQFFGLPQEEEDEEERAVVGFWSSFGWLVGMTIVIAILSQYIVATIEDASKSWGVSVSFISIILLPIMGNAAEHAGSIIFAVKNKLDITLGIALGSAAQISLFVVPLSVIIGWCMGIKMDLDFGILETTSLAFTIILTIFTLQDGSSHYIKGMVLVLCYVAISSCFFCS 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1726218 1732832 + CaPI482276_03g000760.1 Cam03g0076 122342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0076 396 Pfam Sodium/calcium exchanger protein 251 389 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cam03g0076 396 Pfam Sodium/calcium exchanger protein 68 224 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cam03g0076 396 Gene3D - 98 237 IPR044880 -
Cam03g0076 396 Gene3D - 243 393 IPR044880 -
Cam03g0076 396 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 32 395 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cam03g0076 396 FunFam Vacuolar cation/proton exchanger 238 395 - -
Cam03g0076 396 NCBIfam calcium/proton exchanger 52 394 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0076 Cam-Chr3:1726218 Cam10g0392 Cam-Chr10:6250148 1.40E-86 dispersed
Cam10g2167 Cam-Chr10:35147416 Cam03g0076 Cam-Chr3:1726218 3.60E-119 wgd
Cam03g0076 Cam-Chr3:1726218 Cam04g0714 Cam-Chr4:21511717 3.20E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0076 K07300 - csv:105436053 629.017