Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0118 ATGCGTGTCAAAAAGGAAGTCTCTCTCTTGTCGCGCTGCTCCAATCTTATTGGGCCACGTTTCCACCACCTCCCCAAACTAATTCTACGCGTGTCCTCTTCTGATCAACCCACCCCTTCTCAATCAACGGCTCAGATCTTTCCATTCACTACGTCACGCACTTTACTACCTCTTCGATCTGCCCGTCTCTCCCCGGGTAGCTACCCTTGCCGTCGCCGTCGTCGTCGTCGTCGGCTTATTTCGGAGATTGAAGTAATCAACTGCGGCTGGGGTAGGGGGGAGGGGAGATTAAAGAACTTAGTAATGGCGGAGATTTGCTGTAAAGTGATGAGTGAGAGTGAGGCGTCGTCGTCCTGCGAGCCGAGCTCGCGAGTGGCTAGACGTCGGAGAATGGAGATCAGGAGGTGTAAATTTGTCGCCGGAGTTGCTCCGTCGGAGACTGAGACTGTTGCAAAGAGGCAGAAGCTGGAGGATCGAGCTACGTCAATATCCAGAGACTGTGATAACGCAGTCCAGAATTGTGATTCGGGAGAAGAAGAAACGGTCGGGAGATTTGTGGCCGGAGAGGTTTCGACGAAGGAGGTATCAACTCCTCTGTCTCGGGAATCTCCCTCTGGCGAAGTGATTCCGAAGTTCGGATTCTCTTCTGTTTGTGGAAGGCGGAGAGATATGGAGGATGCGGTGGCGGTTCATCCATCGCTTTGTTTGACAGACAAGAAAGCCACCGATATGTTGCACTTCTTCGGTGTTTACGATGGCCATGGCTGCTCTCATGTGGCGATGAGGTGCAAGGAGCGGCTGCATGAACTGGTAAAAGATGAGTTGGATAGAGAAGAGAAGGAAGACGCCGCTGCTGCGGCAGAGGCGGAGGCGTCGCGGTGGGACCGTGCTATGAAGAGAATCTTCTGGCGAATGGACAACGAAGTTGTGGCGCGAAACAATGAAGAAGTTGTGGTTGCGAACTGTAGATGCGAGCTTCAGTCGCCGGATTGTGATGCCGTCGGATCTACCGCCGTCGTCGCAATTGTGACGCCGGATAAGATCATCGTCGCCAACTGCGGCGATTCCAGAGCCGTTCTCTGCCGCAACGGGAAGGCCATCCCTCTCTCCTCCGATCATAAGCCGGATCGTCCCGACGAGCTTAGCCGAATCGAGGAAGCCGGTGGGCGAGTGATTTACTGGGACGGACCGCGAGTTCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGCGATAATTATTTAAAACCGTATGTGATATCGGAGCCGGAGGTGACAATAACGAATCGGACGGCGGAGGATGAGTGCTTGATTCTAGCGAGCGACGGGCTGTGGGATGTGGTGCCGAACGAGACGGCGTGTGGAGTGGCGAGCATGTGCCTTAGGGGGAAGACGGAGGAGAGGTCTCCGGTGTCACCGTCGGGGGAGGCGGAGACGGCGGCGGAAGGGGAGGAGCGAGGGAGCGCAGACAAGGCCTGCAACGATGCGTCGATGCTGCTGACGAAGCTGGCGTTGGCCAGGCACAGTACGGACAACGTGAGCGTCGTGGTGGTGGACCTTAAGAGGGACACGTACCCTTAG 1578 55.7 MRVKKEVSLLSRCSNLIGPRFHHLPKLILRVSSSDQPTPSQSTAQIFPFTTSRTLLPLRSARLSPGSYPCRRRRRRRRLISEIEVINCGWGRGEGRLKNLVMAEICCKVMSESEASSSCEPSSRVARRRRMEIRRCKFVAGVAPSETETVAKRQKLEDRATSISRDCDNAVQNCDSGEEETVGRFVAGEVSTKEVSTPLSRESPSGEVIPKFGFSSVCGRRRDMEDAVAVHPSLCLTDKKATDMLHFFGVYDGHGCSHVAMRCKERLHELVKDELDREEKEDAAAAAEAEASRWDRAMKRIFWRMDNEVVARNNEEVVVANCRCELQSPDCDAVGSTAVVAIVTPDKIIVANCGDSRAVLCRNGKAIPLSSDHKPDRPDELSRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITNRTAEDECLILASDGLWDVVPNETACGVASMCLRGKTEERSPVSPSGEAETAAEGEERGSADKACNDASMLLTKLALARHSTDNVSVVVVDLKRDTYP 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2108061 2110110 + CaPI482276_03g001180.1 Cam03g0118 122384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0118 525 Coils Coil 261 297 - -
Cam03g0118 525 ProSitePatterns PPM-type phosphatase domain signature. 247 255 IPR000222 GO:0043169(InterPro)
Cam03g0118 525 SUPERFAMILY PP2C-like 204 520 IPR036457 -
Cam03g0118 525 ProSiteProfiles PPM-type phosphatase domain profile. 211 519 IPR001932 -
Cam03g0118 525 Gene3D - 201 523 IPR036457 -
Cam03g0118 525 CDD PP2Cc 211 519 IPR001932 -
Cam03g0118 525 Pfam Protein phosphatase 2C 212 468 IPR001932 -
Cam03g0118 525 Coils Coil 153 173 - -
Cam03g0118 525 FunFam Protein phosphatase 2C 50 209 523 - -
Cam03g0118 525 PANTHER PROTEIN PHOSPHATASE 173 518 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cam03g0118 525 SMART PP2C_4 201 517 IPR001932 -
Cam03g0118 525 MobiDBLite consensus disorder prediction 464 489 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0118 Cam-Chr3:2108061 Cam05g1049 Cam-Chr5:9518755 9.60E-67 dispersed
Cam03g1633 Cam-Chr3:31327692 Cam03g0118 Cam-Chr3:2108061 7.00E-67 transposed
Cam05g0910 Cam-Chr5:8178436 Cam03g0118 Cam-Chr3:2108061 9.50E-78 transposed
Cam07g0047 Cam-Chr7:1604516 Cam03g0118 Cam-Chr3:2108061 4.60E-15 transposed
Cam07g1177 Cam-Chr7:26154272 Cam03g0118 Cam-Chr3:2108061 1.80E-65 transposed
Cam08g1452 Cam-Chr8:20806036 Cam03g0118 Cam-Chr3:2108061 3.10E-64 transposed
Cam09g0018 Cam-Chr9:1120409 Cam03g0118 Cam-Chr3:2108061 1.30E-38 transposed
Cam11g0696 Cam-Chr11:8570213 Cam03g0118 Cam-Chr3:2108061 4.20E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0118 K14497 - csv:101206871 706.827