Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam03g0128 | ATGGGAGAGGAGGTGAAGATGGCCGAATATGAGAGCGGTGGTGGCGGTGACGATGAAAACTGTGCTCATGAGGAACGAGTAGTTGAATGGGAAACGGGTTTGCCTGACGCCGACGATCTCACTCCTCTGTCTCAGACTTTGATTCCGCCGGAGCTTGCATCAGCATTCAGTATATCGACGGGGCCATGTCGGACACTGATGGATGTTAATCGAGCATCGCAGAATACGTTATCGAATCTTCGTGGATTTCAAGCACAAGCGTTTTCGTCAAATAATTTCAAGTCGTTTAATGATGATCGGAGTCGGGATCATGATCCAATGGTGGTTGAAGGAGATGAGGCAACGGAGAGGGATGCAGGGTCTGATTCTAGGAAATTGAGAAAGGTTGATTGTACGGAGGAGGCTGATTCGGCTCTTCGGACGGATAATTCAATGGATGATCCATCGGCTCGGACTTTGAAGAGACCGAGGCTTGTATGGACGCCGCAATTACATAAGCGGTTTGTGGATGTTGTTGCTCATCTTGGAATTAAGAACGCGGTTCCTAAAACTATTATGCAGTTAATGAATGTGGAGGGATTGACTCGGGAGAATGTTGCGAGTCATCTTCAGAAGTATAGGCTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAAGGCCCGTCGTCGCCGGACCGGATTTTTGCGTCCACGCCTGTACCGCAGACCTTGCACGAGTCTACCAACAGTGGGCATGCCAATGGAAATGGGCATTTGCCAGTTCCAACTCCGATGCCGTATGGACCGCCAATGATGCCTATGCCGGTGCTTGGCATGGCAGCGTCTGGTCATGCACACAGTTATATGGGTATGCCGGTCGCTCATCCGGGAAGCGCACAGGCATACCCTGGCTTTGAAACGCATCCTTTCAACATGATGCATCAGAGAGATTGGTCGGGGAACAAATACGGCTCGATCGTGCCTTACCCTCATCCTCATGTACCTCCTAGTACTAATGATAAGTGA | 1005 | 49.95 | MGEEVKMAEYESGGGGDDENCAHEERVVEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQAQAFSSNNFKSFNDDRSRDHDPMVVEGDEATERDAGSDSRKLRKVDCTEEADSALRTDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRIFASTPVPQTLHESTNSGHANGNGHLPVPTPMPYGPPMMPMPVLGMAASGHAHSYMGMPVAHPGSAQAYPGFETHPFNMMHQRDWSGNKYGSIVPYPHPHVPPSTNDK | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2173440 | 2174444 | - | CaPI482276_03g001280.1 | Cam03g0128 | 122394 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam03g0128 | 334 | Gene3D | - | 152 | 214 | - | - | |
Cam03g0128 | 334 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 156 | 208 | IPR006447 | GO:0003677(InterPro) | |
Cam03g0128 | 334 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cam03g0128 | 334 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 160 | 211 | IPR017930 | - | |
Cam03g0128 | 334 | MobiDBLite | consensus disorder prediction | 93 | 150 | - | - | |
Cam03g0128 | 334 | MobiDBLite | consensus disorder prediction | 96 | 150 | - | - | |
Cam03g0128 | 334 | Pfam | Myb-like DNA-binding domain | 158 | 207 | IPR001005 | - | |
Cam03g0128 | 334 | SUPERFAMILY | Homeodomain-like | 152 | 212 | IPR009057 | - | |
Cam03g0128 | 334 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 20 | 293 | IPR044841 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cam03g0128 | 334 | FunFam | Two-component response regulator | 151 | 214 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam03g0128 | Cam-Chr3:2173440 | Cam04g0579 | Cam-Chr4:19485636 | 9.20E-39 | dispersed | |
Cam02g2065 | Cam-Chr2:33573930 | Cam03g0128 | Cam-Chr3:2173440 | 9.20E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51616 | PF00249 | Myb_DNA-binding | 1.40E-08 | CL0123 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam03g0128 | - | - | - | 0.0 |