Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0142 ATGGCTAAAACCGCCATTCTCCTCTGCATTGCGACTATCATTTCAACAATGTGGACGGCCGGCGCCAGAATTCCCGGCGTCTACTCCGGTGGCCCATGGGAGAGTGCCCATGCCACGTTCTACGGCGGCTCCGATGCCTCCGGCACAATGGGTGGAGCTTGTGGGTATGGGAACTTGTACAGCCAAGGGTACGGAGTGAACACGGCGGCGTTGAGTACGGCGCTGTTTAACAATGGGCTGAGCTGCGGCGCCTGTTTCGAAATCAAATGTGCAAATGACCCGAGATGGTGCCATTCCGGCAGCCCGTCGATTATTATTACGGCCACTAATTTCTGTCCGCCGAACTTTGCTTTGCCCAGTGACAATGGCGGATGGTGTAATCCTCCTCGCCCGCATTTCGATTTGGCTATGCCTATGTTTCTTAAGATCGCTGAGTATCGCGCCGGAATCGTCCCCGTCGCCTACCGCCGAGTGGCATGCCGGAAGCAAGGGGGGATCCGGTTCACAATCCACGGGTTCAGATACTTCAACTTGGTGTTAATCACCAACGTCGCGGGTGCAGGGGATATCGTGAAGGTGAGCGTGAAAGGCACGCGCACCGGTTGGATGAGCATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAACGCCGTGTTGGTGGGCCAGGCCTTGTCTTTTAGAGTCACAGGCAGTGACAGACGGACTTCCACCTCCTTCAACGTGGCGCCTTCTGATTGGCAGTTCGGTCAGACCTTCACCGGCAAGAATTTTAGGGTTTGA 780 55.77 MAKTAILLCIATIISTMWTAGARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIIITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVACRKQGGIRFTIHGFRYFNLVLITNVAGAGDIVKVSVKGTRTGWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSFNVAPSDWQFGQTFTGKNFRV 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2342561 2344381 + CaPI482276_03g001420.1 Cam03g0142 122408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0142 259 FunFam Expansin 22 161 - -
Cam03g0142 259 CDD DPBB_EXPA_N 32 160 - -
Cam03g0142 259 Gene3D - 21 161 IPR036908 -
Cam03g0142 259 SMART dpbb_1 68 155 IPR007112 -
Cam03g0142 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Cam03g0142 259 PANTHER EXPANSIN-A15 10 257 IPR002963 GO:0009664(InterPro)
Cam03g0142 259 FunFam Expansin 165 257 - -
Cam03g0142 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Cam03g0142 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Cam03g0142 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Cam03g0142 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Cam03g0142 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Cam03g0142 259 Gene3D - 165 257 IPR036749 -
Cam03g0142 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664(InterPro)
Cam03g0142 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664(InterPro)
Cam03g0142 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
Cam03g0142 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664(InterPro)
Cam03g0142 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664(InterPro)
Cam03g0142 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664(InterPro)
Cam03g0142 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664(InterPro)
Cam03g0142 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Cam03g0142 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664(InterPro)
Cam03g0142 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576(InterPro)
Cam03g0142 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Cam03g0142 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Cam03g0142 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576(InterPro)
Cam03g0142 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576(InterPro)
Cam03g0142 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0142 Cam-Chr3:2342561 Cam09g2011 Cam-Chr9:34743180 7.40E-121 dispersed
Cam01g0866 Cam-Chr1:10047756 Cam03g0142 Cam-Chr3:2342561 1.70E-75 transposed
Cam02g0338 Cam-Chr2:4137936 Cam03g0142 Cam-Chr3:2342561 1.40E-73 transposed
Cam02g2077 Cam-Chr2:33675434 Cam03g0142 Cam-Chr3:2342561 1.10E-137 wgd
Cam03g0142 Cam-Chr3:2342561 Cam04g0911 Cam-Chr4:23247577 1.50E-134 wgd
Cam03g0142 Cam-Chr3:2342561 Cam07g0331 Cam-Chr7:4460313 4.50E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0142 - - - 0.0