Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0158 ATGAGCAAAAGCGCCGTTACAACAAACGTCAAAACTACTAACAAACAGCTTCTAAATCCGTCTTCTGCTATGGAGGAAGATAACGGCGCTCTTATTCAGAGTCTGATCGATGTAGTGAATGAGATTGCTTGGATCTCGGATTTTAGGTATACTGTTAAGAAGCAGTATTGCAATTTGTCCAGGAGATTGAAGCTTCTGATCCCAATGTTCGAAGAGATTAGAGACAGTAAAGAGCCTGTTTCTGAGGATACTCTTAACGCTCTCATATTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAAGGGAGCAAGATTTTCCTGGCTGTAGAGAGGGAGCAAATTATGAACAAATTTCACGAGGTAACTGCTCGGTTGGAACAAGCGTTGGAAGGAATAGCCTATGATAAACTTGATATATCCGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTTGCTCAGTTCAGAAGGGCCAAAGGCAGGGCCGATGCTCCTGACTCTGAGCTGTTGGATGATATCCTTGCCCTTTACAACACGAGCAATGATTCTTCTATAGATCAAGACCGCCTAAGGAGACTGTCCGAAAAATTACAGTTAGTTGGAATATCCGATCTTACACAAGAGTCAATAGCTTTGCATGAGATGGTTTCTGCTACTGATGGGGATCCAGGCGAGAGCATTGAGAAGATGGCAGGGCTGCTAAAGAAAATAAAAGATTTCGTGCAAACAGAGAACCTCGAAACGGACACTCCTAGTAGAGAACAGAGTCCTCCAGCAAGTTGTAGTGGACAAGTATCCAATGATAAAAATAACAAGGCCCCAATTATACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCATGGGACGTGTCCAAAGACACAACAAAACCTTTCAAGCACTACTCTTACCCCAAATTATGTGTTGCGTAGCCTTATAGCCCAATGGTGCGAGGCTAATGGTATCGAACCACCAAAACGACCCAGCAGTGCTCGACCATGTAGAAGCTCTTCATCTTGCTCACCTGCTGAACGCACAAAGATTGATATTCTTCTTTGCAAACTTGCATCTGGAAATCCTGAAGATCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCAAAACGGAACGCAGATAATCGCGTTGCTATTGCCGAGGCAGGTGCTATACCTCTCCTTGTCGGCCTTCTTTCAACTCCAGACTCCCGTGTTCAAGAGCATGCTGTAACAGCACTTCTTAACCTTTCTATATGCGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATTGTTCTCGTGCTTAAGAAGGGGAGCATGGAAGCACGGGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTTGATGAAAATAAAGTTAGGATTGGTGCCTCCGGAGCTATCCCGCCGCTTGTAACACTGCTTAGTGAAGGCACGCAAAGGGGTAAGAAAGATGCTGCCACTGCACTTTTCAACTTATGCATCTACCAAGGAAACAAAGGCAAGGCAGTTAGAGCTGGTGTAGTTCCAACCTTAATGCAGCTTCTCACCGAGCCCGGAACCGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAATACTTGCTAGCCATCCTGAAGGGAAAGCTGCCATCGGATCCGCAAAGGCAGTGCCGGTTTTGGTAGATGTTATTGGGACAGGATCCCCCAGGAACAGAGAGAATGCGGCTGCAGTTCTTGTGCACCTCTGCTCGGGAGACGAGCAACACCTAGTAGAGGCCAGGGAACTTGGAGTGATCAGTCCATTGATAGATTTGGCACGCAGTGGCACAGATAGAGGAAAGCGAAAAGCTGCACAGTTGCTTGAACGAATGAACCGACTGTTTGAGCACGCGGCACATCAGGAGGAGCTTCGGGTGCTTCGGTTACAATCGTCGGAGTCTCAACCTCAAAGCCAGCCATCACAATCAACATCGACAACGGAAGTCGTTGGTAGCTGA 2082 46.88 MSKSAVTTNVKTTNKQLLNPSSAMEEDNGALIQSLIDVVNEIAWISDFRYTVKKQYCNLSRRLKLLIPMFEEIRDSKEPVSEDTLNALILLKEALESAKKLLRFGSEGSKIFLAVEREQIMNKFHEVTARLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKGRADAPDSELLDDILALYNTSNDSSIDQDRLRRLSEKLQLVGISDLTQESIALHEMVSATDGDPGESIEKMAGLLKKIKDFVQTENLETDTPSREQSPPASCSGQVSNDKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPEGKAAIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARELGVISPLIDLARSGTDRGKRKAAQLLERMNRLFEHAAHQEELRVLRLQSSESQPQSQPSQSTSTTEVVGS 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2460309 2465111 + CaPI482276_03g001580.1 Cam03g0158 122424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0158 693 FunFam RING-type E3 ubiquitin transferase 281 354 - -
Cam03g0158 693 CDD RING-Ubox_PUB 282 334 IPR045210 -
Cam03g0158 693 SMART Ubox_2 284 347 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam03g0158 693 MobiDBLite consensus disorder prediction 251 279 - -
Cam03g0158 693 Gene3D - 30 140 IPR036537 GO:0007166(InterPro)
Cam03g0158 693 FunFam RING-type E3 ubiquitin transferase 28 141 - -
Cam03g0158 693 SUPERFAMILY RING/U-box 278 357 - -
Cam03g0158 693 FunFam RING-type E3 ubiquitin transferase 364 515 - -
Cam03g0158 693 Pfam U-box domain 281 351 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam03g0158 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515(InterPro)
Cam03g0158 693 SMART arm_5 531 571 IPR000225 GO:0005515(InterPro)
Cam03g0158 693 SMART arm_5 408 448 IPR000225 GO:0005515(InterPro)
Cam03g0158 693 SMART arm_5 449 489 IPR000225 GO:0005515(InterPro)
Cam03g0158 693 SMART arm_5 572 612 IPR000225 GO:0005515(InterPro)
Cam03g0158 693 SMART arm_5 614 654 IPR000225 GO:0005515(InterPro)
Cam03g0158 693 SMART arm_5 490 530 IPR000225 GO:0005515(InterPro)
Cam03g0158 693 MobiDBLite consensus disorder prediction 251 276 - -
Cam03g0158 693 PANTHER U BOX DOMAIN-CONTAINING 51 654 - -
Cam03g0158 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 461 IPR000225 GO:0005515(InterPro)
Cam03g0158 693 Pfam Mixed lineage kinase domain-like N-terminal domain 52 139 IPR054000 -
Cam03g0158 693 SUPERFAMILY ARM repeat 379 652 IPR016024 -
Cam03g0158 693 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam03g0158 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 354 IPR013083 -
Cam03g0158 693 Gene3D - 366 691 IPR011989 -
Cam03g0158 693 FunFam RING-type E3 ubiquitin transferase 555 673 - -
Cam03g0158 693 Pfam Armadillo/beta-catenin-like repeat 408 447 IPR000225 GO:0005515(InterPro)
Cam03g0158 693 Pfam Armadillo/beta-catenin-like repeat 491 529 IPR000225 GO:0005515(InterPro)
Cam03g0158 693 Pfam Armadillo/beta-catenin-like repeat 573 612 IPR000225 GO:0005515(InterPro)
Cam03g0158 693 CDD MLKL_NTD 33 161 - -
Cam03g0158 693 MobiDBLite consensus disorder prediction 669 693 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1458 Cam-Chr1:28145016 Cam03g0158 Cam-Chr3:2460309 1.10E-09 dispersed
Cam02g1021 Cam-Chr2:15556894 Cam03g0158 Cam-Chr3:2460309 1.30E-81 dispersed
Cam03g0158 Cam-Chr3:2460309 Cam05g2319 Cam-Chr5:31267579 5.60E-115 dispersed
Cam06g0858 Cam-Chr6:12193031 Cam03g0158 Cam-Chr3:2460309 2.30E-16 transposed
Cam08g2190 Cam-Chr8:27269956 Cam03g0158 Cam-Chr3:2460309 4.50E-36 transposed
Cam11g1412 Cam-Chr11:26804562 Cam03g0158 Cam-Chr3:2460309 1.20E-36 transposed
Cam02g2095 Cam-Chr2:33809438 Cam03g0158 Cam-Chr3:2460309 4.00E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0158 K27628 - csv:101218572 1148.27