Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam03g0231 | ATGATGTCTGAATTTGATGGCCTTTCTGGTCTGTCCACAATCAGCAATCTGATTGGTCAACACAATCCTAATTCCAACCCTAATTCACTTGTTGTTCCTCTTAAGAAGAAGAGAAATTTACCAGGAACACCAGATCCAGATGCGGAAGTAATAGCAATGTCTCCGAAGTCTCTAATGGCGAAGAATAGATTCATTTGCGAGATATGCAATAAGGGATTTCAAAGAGACCAAAACTTGCAGCTTCACCGACGAGGGCACAACTTGCCGTGGAAGCTCCGACAAAGGACGAGCAAGGAAGTGAGGAAGAAGGTGTATGTTTGCCCGGAGAAGAGCTGCGTGCACCACGACCCGGCGAGGGCGCTCGGCGACCTCACCGGGATCAAGAAGCACTATAGTAGGAAGCATGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCCAAGAAGTATGCAGTTCAATCAGATTGGAAGGCTCATTCTAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTTTCCAGAAAGGATAGCTTCATTACTCACAGAGCATTTTGTGATGCATTAACTGAAGAAAACTCAAGAATAAATCATCATCATCATCATCATCCAACCTTCATAAACAACAACTTTTCTCCTACTTCTTCTTCACTACTTCTCCAACCAAACTTCGCCACCGTCACTGTCGCTGCCGATCAATCCTCCCTTGCCCACAATTTTCCTAACATTATCTCCGACCACGACGGCGACCACAAGCCCCATCCTCTTCCGCTGTCGTCGCCACCGCAGCTCCCGCTCTGGCTCGACCCTCCTCCCAATACTCCTAACCCCTTTTTCTCTTCGGCCACTGCCATCCACGGCTTCTCCGACCACCCTACATTCTTCTCGGAAAATCACCACCTTTTTTTGTCGGAGCCGCTAACGACGGCCTCCTCGTACGCAGCGGCGCCCCACATGTCCGCCACCGCACTCCTCCAAAATGCCGCCCAAATGGGGCCCACCAGAACCCCAGCCGGGCCGCCGATTCTCTTCAATGCCTCCACCACCGGGGCGGCATATGGAACGAACAACTCAGCCGCTGCTGGCGCGGTCTTATCGGATGGCCGTCCGATGAAGCCATTAATGGGGGGAGCTAAGGATGAAATTGGAGGGCAGAATTTTACCAGAGACTTTCTCGGCGTAGGAAATCAGGTGGTGCATCTCACTCCGGTGGGTTCCAATCAATACAGTGATCAGAGCCGCGGCCATTAG | 1257 | 50.6 | MMSEFDGLSGLSTISNLIGQHNPNSNPNSLVVPLKKKRNLPGTPDPDAEVIAMSPKSLMAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYVCPEKSCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALTEENSRINHHHHHHPTFINNNFSPTSSSLLLQPNFATVTVAADQSSLAHNFPNIISDHDGDHKPHPLPLSSPPQLPLWLDPPPNTPNPFFSSATAIHGFSDHPTFFSENHHLFLSEPLTTASSYAAAPHMSATALLQNAAQMGPTRTPAGPPILFNASTTGAAYGTNNSAAAGAVLSDGRPMKPLMGGAKDEIGGQNFTRDFLGVGNQVVHLTPVGSNQYSDQSRGH | 418 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3350558 | 3353114 | - | CaPI482276_03g002310.1 | Cam03g0231 | 122497 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam03g0231 | 418 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 101 | 135 | - | - | |
Cam03g0231 | 418 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 66 | 86 | IPR013087 | - | |
Cam03g0231 | 418 | Gene3D | Classic Zinc Finger | 60 | 87 | - | - | |
Cam03g0231 | 418 | MobiDBLite | consensus disorder prediction | 19 | 46 | - | - | |
Cam03g0231 | 418 | FunFam | protein indeterminate-domain 12-like | 43 | 111 | - | - | |
Cam03g0231 | 418 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 166 | 204 | - | - | |
Cam03g0231 | 418 | Gene3D | Classic Zinc Finger | 97 | 189 | - | - | |
Cam03g0231 | 418 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 118 | 197 | - | - | |
Cam03g0231 | 418 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 64 | 86 | IPR013087 | - | |
Cam03g0231 | 418 | Pfam | Zinc finger, C2H2 type | 64 | 86 | IPR013087 | - | |
Cam03g0231 | 418 | SMART | c2h2final6 | 64 | 86 | IPR013087 | - | |
Cam03g0231 | 418 | SMART | c2h2final6 | 105 | 135 | IPR013087 | - | |
Cam03g0231 | 418 | SMART | c2h2final6 | 140 | 160 | IPR013087 | - | |
Cam03g0231 | 418 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 139 | 163 | - | - | |
Cam03g0231 | 418 | SUPERFAMILY | beta-beta-alpha zinc fingers | 63 | 160 | IPR036236 | - | |
Cam03g0231 | 418 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 23 | 402 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam03g0231 | Cam-Chr3:3350558 | Cam10g2003 | Cam-Chr10:33907426 | 1.90E-86 | dispersed | |
Cam03g0231 | Cam-Chr3:3350558 | Cam01g1981 | Cam-Chr1:33100665 | 5.10E-87 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51624 | PF12171 | zf-C2H2_jaz | 5.90E-05 | CL0361 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam03g0231 | K25870 | - | csv:101212420 | 627.091 |