Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0231 ATGATGTCTGAATTTGATGGCCTTTCTGGTCTGTCCACAATCAGCAATCTGATTGGTCAACACAATCCTAATTCCAACCCTAATTCACTTGTTGTTCCTCTTAAGAAGAAGAGAAATTTACCAGGAACACCAGATCCAGATGCGGAAGTAATAGCAATGTCTCCGAAGTCTCTAATGGCGAAGAATAGATTCATTTGCGAGATATGCAATAAGGGATTTCAAAGAGACCAAAACTTGCAGCTTCACCGACGAGGGCACAACTTGCCGTGGAAGCTCCGACAAAGGACGAGCAAGGAAGTGAGGAAGAAGGTGTATGTTTGCCCGGAGAAGAGCTGCGTGCACCACGACCCGGCGAGGGCGCTCGGCGACCTCACCGGGATCAAGAAGCACTATAGTAGGAAGCATGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCCAAGAAGTATGCAGTTCAATCAGATTGGAAGGCTCATTCTAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTTTCCAGAAAGGATAGCTTCATTACTCACAGAGCATTTTGTGATGCATTAACTGAAGAAAACTCAAGAATAAATCATCATCATCATCATCATCCAACCTTCATAAACAACAACTTTTCTCCTACTTCTTCTTCACTACTTCTCCAACCAAACTTCGCCACCGTCACTGTCGCTGCCGATCAATCCTCCCTTGCCCACAATTTTCCTAACATTATCTCCGACCACGACGGCGACCACAAGCCCCATCCTCTTCCGCTGTCGTCGCCACCGCAGCTCCCGCTCTGGCTCGACCCTCCTCCCAATACTCCTAACCCCTTTTTCTCTTCGGCCACTGCCATCCACGGCTTCTCCGACCACCCTACATTCTTCTCGGAAAATCACCACCTTTTTTTGTCGGAGCCGCTAACGACGGCCTCCTCGTACGCAGCGGCGCCCCACATGTCCGCCACCGCACTCCTCCAAAATGCCGCCCAAATGGGGCCCACCAGAACCCCAGCCGGGCCGCCGATTCTCTTCAATGCCTCCACCACCGGGGCGGCATATGGAACGAACAACTCAGCCGCTGCTGGCGCGGTCTTATCGGATGGCCGTCCGATGAAGCCATTAATGGGGGGAGCTAAGGATGAAATTGGAGGGCAGAATTTTACCAGAGACTTTCTCGGCGTAGGAAATCAGGTGGTGCATCTCACTCCGGTGGGTTCCAATCAATACAGTGATCAGAGCCGCGGCCATTAG 1257 50.6 MMSEFDGLSGLSTISNLIGQHNPNSNPNSLVVPLKKKRNLPGTPDPDAEVIAMSPKSLMAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYVCPEKSCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALTEENSRINHHHHHHPTFINNNFSPTSSSLLLQPNFATVTVAADQSSLAHNFPNIISDHDGDHKPHPLPLSSPPQLPLWLDPPPNTPNPFFSSATAIHGFSDHPTFFSENHHLFLSEPLTTASSYAAAPHMSATALLQNAAQMGPTRTPAGPPILFNASTTGAAYGTNNSAAAGAVLSDGRPMKPLMGGAKDEIGGQNFTRDFLGVGNQVVHLTPVGSNQYSDQSRGH 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3350558 3353114 - CaPI482276_03g002310.1 Cam03g0231 122497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0231 418 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 101 135 - -
Cam03g0231 418 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Cam03g0231 418 Gene3D Classic Zinc Finger 60 87 - -
Cam03g0231 418 MobiDBLite consensus disorder prediction 19 46 - -
Cam03g0231 418 FunFam protein indeterminate-domain 12-like 43 111 - -
Cam03g0231 418 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 166 204 - -
Cam03g0231 418 Gene3D Classic Zinc Finger 97 189 - -
Cam03g0231 418 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Cam03g0231 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Cam03g0231 418 Pfam Zinc finger, C2H2 type 64 86 IPR013087 -
Cam03g0231 418 SMART c2h2final6 64 86 IPR013087 -
Cam03g0231 418 SMART c2h2final6 105 135 IPR013087 -
Cam03g0231 418 SMART c2h2final6 140 160 IPR013087 -
Cam03g0231 418 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 139 163 - -
Cam03g0231 418 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Cam03g0231 418 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 402 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0231 Cam-Chr3:3350558 Cam10g2003 Cam-Chr10:33907426 1.90E-86 dispersed
Cam03g0231 Cam-Chr3:3350558 Cam01g1981 Cam-Chr1:33100665 5.10E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51624 PF12171 zf-C2H2_jaz 5.90E-05 CL0361 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0231 K25870 - csv:101212420 627.091