Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0244 ATGGAGTCCAGTGAGCCAAAATCCAGCCCAACTTCAACTAACCTCCTTTCTCAGTCGTCGCCGTCGTCTCCTTCACCGCCGCCGAGTGTTCAGGCCGCCGTGGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTGAGGCGGAGATGCGCAGAGAAATGCGTATTAGCGCCCTATTTTCCTCCCTCTGATCCTCTCAAATTCACCATTGCTCACCGTGTCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGATTCACAAAGGGCTGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGCCAGCTTCAGAAACAGATAAACGAATTGCAAGCAGAACTAGCCAAGACACAGGCTGAGCTTGTCAATATCCACTGCCACCAAGCCAATTTGGTGGCTCTGATTTGCAAGGAGTTAGCCCAAACGCCGCCACCGATGTCGCCACTGCCGGACCACCGCTCACTTGACAACAATTTCAACATTGCCACACCTCAGAGCTACCAAGGCTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACATGA 609 50.57 MESSEPKSSPTSTNLLSQSSPSSPSPPPSVQAAVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSPLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3559117 3560129 + CaPI482276_03g002440.1 Cam03g0244 122510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0244 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 36 158 - -
Cam03g0244 202 MobiDBLite consensus disorder prediction 1 29 - -
Cam03g0244 202 Coils Coil 117 144 - -
Cam03g0244 202 MobiDBLite consensus disorder prediction 1 20 - -
Cam03g0244 202 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Cam03g0244 202 Pfam Lateral organ boundaries (LOB) domain 38 135 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1446 Cam-Chr2:27333997 Cam03g0244 Cam-Chr3:3559117 2.10E-50 dispersed
Cam02g2159 Cam-Chr2:34387261 Cam03g0244 Cam-Chr3:3559117 2.40E-55 dispersed
Cam03g0244 Cam-Chr3:3559117 Cam09g2080 Cam-Chr9:35352295 5.20E-37 dispersed
Cam03g0241 Cam-Chr3:3530318 Cam03g0244 Cam-Chr3:3559117 7.90E-66 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51626 PF03195 LOB 4.50E-41 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0244 - - - 0.0