Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0294 ATGAGAGCTATCATATTGAATTCAGATTTGAGATCAGTTTTACGTCCAAACGTCAGCTTCAACTTGCTTCCCGGCTCTGATGAAATGATCAATTTTTCGAGAGATTCCAATGTTTTATCGCACCAAAGGGACATGATGTTGCGTCAAGAATTGGAAGACCCAGCTCAATCCAGTAGACAAATTGTGACAGATGCCTCTGGTGGAATTGTAAATAATAGTGTTGATTATTGGAAAAGCTCTCATCAAAGCTGTGATTGGGTGGTGAACTGTGGAAGTAATTCTTTTGGAGGTGAAATGTTGAATCAGGAAGTAACTGATTCTACAGTGTATTCACTGAAGCCAACTTGCATTGGATTCCAAACTTCTTCCTCTTTTAATAATCCATCCAACGAGACATTCAATCAGGATGGACAAAAGCGTATAGGAGGAGAATTGCATTTGCCTCCAATTTACCAAAATACCCTTCAGGATGTTGTTACATCAGCCTCCATTCGAACTCAGGGCCTGGAAATGGCATCCATTGTGCAGCATAATTTCACTGAAATTAACCAGACTGCTGCTTGTGAAGGCAGTGGGAATGAGCTTGCTCTTCTTCCAGTGTACAGGGATCAGTCAAATGTGTTGCCTTATGACAGTACTGGTTCTTGGACTGATAGAACTTTCTATAATTGCCGCAGCTGGATTGGTGAATTGGGCTCTATTGCTAGAAAAACCGATGAAGAGTTAAGGACTTTTATGAGTGATTCCAATCCACAAGGTCTATCCCTGTCGCTGTCTTCGAATCCGCCGTCTAAATTGCCCACCACACAGTTCGTAGAATCAGAGGAATTACAGGAAAGTATCACTGTGTTAAAAAATACCCAAGAATCCAAAACAGTCAAATCTGAGAATTTGTGTAGATTACCAAAGCCAACATCTATTGGTAATAAAAATTATGGGAAATCTCTTCAAGATGTGATGGGAGTTCCTGTCAATCCATATAGAAACACAGGTCCTCTTGGTCCCTTTACTGGGTATGCAACCATTTTAAAGAGTTCAAAATTCTTAAAGCCTGCCCAACTGCTGTTAGATGAATTTTGTGGCTCAAGTGGTCATTATAAGTTTGTCCAACCATGTGAGGTATTTGAGAAGACACCTGGGGAAGTTGGTGTCTCAGCGGCCCTTAATGCATTTAGAAATGAGGCTGTTAAGGAAAATAGTTCGTGTGCAGATGCCTCTACATTCTGCGGTTCGAATGAATCAAATGTTAGTGGAGTTGGGAGCATCTCTTCTGAATCTCATCAACCGGAGTATCAGCAAAAGAAAGCAAAACTTCTATATATGCTCGAGGAGGTTTGCAGAAGATACAAACAATATCATCAGCAAATGCAAATGGTAGTTTCATCCTTCGAATCAGTAGCTGGTCTTAGTTCTGCGACACCCTACATTTCCCTGGCACTCAAGACAGTCTCAAGACACTTCCGGTCTCTGAAGAATGCCATCTCGGAGCAACTGAAGTATCTGAGGAAGGTACTTGGTGAGGATTTGTCATCCCCCTCTGCTGGGACAAGCGGCAGCAAAGGTGGTGATGCAAATTCGGTTAGGTTGAAATACATGGAACAGAGCTTCCAGAAGCAAAAATCTGGCATTGTCAATATTGGATTCCTTGAATCCCAAAATGCATGGAGGCCACAGAGAGGGTTGCCTGAACGTGCTGTGGCAATTCTTAGAGCCTGGCTCTTTGAGCATTTTCTTCACCCATACCCCACAGACACAGATAAACACATGTTGGCCACTCAAACAGGCCTATCTCGAAACCAGGTGTCAAATTGGTTCATAAATGCCCGAGTGCGGGTGTGGAAGCCAATGGTTGAAGAGATACACATGCTAGAAACCAAGGGCATGGCAGAGATGAACAACAAAAGCCATGGTATGAGAGATGGAAGTTCTACATTAGAGAAGACTGCCGGTTGGACCAGTAGTGAACGCCAGCCTCTAAAAAACCATGGTGTTACAAATGAAATGGCTAGTCATCATTTGCAGTGCTTGGGGGTAGATTCCTCAAGTGGCAACAGAAATGGACTCGGCTGCGGCGACCAACAGTGGGATCAAGGCAAACAATCCAAATTGGACAATGGGGTTCAGTCCAACATGGAAGGGGAACTGATGGGGTTCGTGCCATATCAAGCCAGTGCAGCTGAGGTTGGAGGACTTGGAGCTGTCTCTCTAACATTAGGCCTTCGCCATCGAGTTGAGAGTGCCCACCATGAACAGCAGCGGCATCAAATGCAGCAACAAGATGACCAACTAATACGCCACTATGGAAGCGAAATGATCCATGATTTTGTGGGGAGCCCAAGTCGCTGTTCGAGGGTTCAGAAAGTTGAAACAGCTCTCGGCAATCTCTCCATATCTCAGATGAAAAAACCTGTTATGATGTTGCTTCTGAAAGAACAATACACTCTTTTGAAAAGAGCATTCTACAATGAGCAGAGACGCATTGGTGATAACTTCAGCGGCTATAATGAATATATTCTCTTCGGCTTTTCTATTCTAAGACATGTTATTTAG 2550 43.37 MRAIILNSDLRSVLRPNVSFNLLPGSDEMINFSRDSNVLSHQRDMMLRQELEDPAQSSRQIVTDASGGIVNNSVDYWKSSHQSCDWVVNCGSNSFGGEMLNQEVTDSTVYSLKPTCIGFQTSSSFNNPSNETFNQDGQKRIGGELHLPPIYQNTLQDVVTSASIRTQGLEMASIVQHNFTEINQTAACEGSGNELALLPVYRDQSNVLPYDSTGSWTDRTFYNCRSWIGELGSIARKTDEELRTFMSDSNPQGLSLSLSSNPPSKLPTTQFVESEELQESITVLKNTQESKTVKSENLCRLPKPTSIGNKNYGKSLQDVMGVPVNPYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFCGSSGHYKFVQPCEVFEKTPGEVGVSAALNAFRNEAVKENSSCADASTFCGSNESNVSGVGSISSESHQPEYQQKKAKLLYMLEEVCRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKTVSRHFRSLKNAISEQLKYLRKVLGEDLSSPSAGTSGSKGGDANSVRLKYMEQSFQKQKSGIVNIGFLESQNAWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMAEMNNKSHGMRDGSSTLEKTAGWTSSERQPLKNHGVTNEMASHHLQCLGVDSSSGNRNGLGCGDQQWDQGKQSKLDNGVQSNMEGELMGFVPYQASAAEVGGLGAVSLTLGLRHRVESAHHEQQRHQMQQQDDQLIRHYGSEMIHDFVGSPSRCSRVQKVETALGNLSISQMKKPVMMLLLKEQYTLLKRAFYNEQRRIGDNFSGYNEYILFGFSILRHVI 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4144824 4150729 + CaPI482276_03g002940.1 Cam03g0294 122560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0294 849 Pfam Homeobox KN domain 572 611 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam03g0294 849 Gene3D - 558 620 - -
Cam03g0294 849 ProSiteProfiles 'Homeobox' domain profile. 552 615 IPR001356 GO:0003677(InterPro)
Cam03g0294 849 FunFam BEL1-like homeodomain protein 9 558 620 - -
Cam03g0294 849 SMART HOX_1 555 619 IPR001356 GO:0003677(InterPro)
Cam03g0294 849 SUPERFAMILY Homeodomain-like 556 621 IPR009057 -
Cam03g0294 849 CDD homeodomain 555 616 IPR001356 GO:0003677(InterPro)
Cam03g0294 849 MobiDBLite consensus disorder prediction 247 267 - -
Cam03g0294 849 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 278 644 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam03g0294 849 SMART prehox3 337 496 IPR006563 -
Cam03g0294 849 Pfam Associated with HOX 342 495 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0294 Cam-Chr3:4144824 Cam11g0432 Cam-Chr11:5734054 1.70E-60 dispersed
Cam03g0294 Cam-Chr3:4144824 Cam10g2115 Cam-Chr10:34766345 4.70E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51631 PF07526 POX 1.20E-42 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0294 - - - 0.0