Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0333 ATGGCACCGCCTACAGTCCCTCTCTCTCTCCTCTCTCTCTTCCTCTTCTCCGTCTCTCTATCCGCCGCTCTCTCCGCTGCCCCTGCCGCCGTTCCCAACCCTGAACTCGTCGTACAAGAAGTACACAGAAGCATAATCAATGCGACGAAGAGGAGGAATTTAGGGTATCTCTCATGTGGGACTGGAAATCCAATCGACGATTGCTGGCGGTGCGATCCCAATTGGGAGAAAAATCGTCAGAGACTAGCCGACTGTGGGATTGGATTCGGCAAAAACGCCATTGGCGGTCGCGACGGCCAAATCTACGTCGTCACTGACTCCGGCGACGATGATCCAGTTAACCCTAAACCAGGAACTCTCCGTTACGCCGTAATCCAAGATGAACCCCTCTGGATCATCTTCGCTCGCGATATGGTGATTCGATTGAAAGAAGAACTGATTATGAATTCCTTCAAAACCATCGACGGCCGTGGCGCTAGCGTCCATATCGCCGGTGGGCCCTGCATTACCATTCAGTACGTGACAAACATTATAATCCATGGTCTCAACATTCACGACTGTAAGCCAGGGGGAAACACGGACGTGAGAGATTCCCCTCGACATTTCGGATTCAGAACCATATCGGACGGGGACGGCGTTTCGATCTTCGGCGGCAGCCATGTTTGGGTTGATCATTGCTCTTTATCAAACTGTAACGATGGATTGATCGACGCCATTCATGGGTCTACTGCGATTACGATTTCGAACAATTACATGACGCATCATGATAAAGTGATGTTGTTGGGGCACAGTGATTCGTACACTCAGGACAAGAATATGCAAGTCACCATTGCTTTCAACCATTTTGGTGAAGGTCTTGTTCAAAGAATGCCCAGATGCAGACATGGGTATTTTCATGTGGTGAACAACGACTATACGCATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCTCCAACTATCAACAGTCAAGGGAACAGATTTGTTGCACCGGATGACAGATTCAGCAAAGAGGTGACAAAATATGAGGATGCACCGGAGAGTGAGTGGAAGAATTGGCATTGGAGATCAGAAGGAGATCTGATGCTAAACGGTGCATTTTTCACTGCCTCCGGCGCCGGAGCGTCGTCAAGTTATGCTAGAGCATCGAGTTTAGGGGCGAGACCGTCGTCGCTCGTCGGTACAATTACGACAAATGCGGGTGCACTGAACTGCAGGAAGGGCTCCCGCTGCTGA 1236 50.16 MAPPTVPLSLLSLFLFSVSLSAALSAAPAAVPNPELVVQEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCGIGFGKNAIGGRDGQIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKPGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPDDRFSKEVTKYEDAPESEWKNWHWRSEGDLMLNGAFFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4514431 4516454 - CaPI482276_03g003330.1 Cam03g0333 122599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0333 411 Gene3D - 62 404 IPR012334 -
Cam03g0333 411 Pfam Pectate lyase 147 328 IPR002022 -
Cam03g0333 411 PANTHER PECTATE LYASE 18-RELATED 21 408 IPR045032 GO:0030570(InterPro)
Cam03g0333 411 SUPERFAMILY Pectin lyase-like 38 406 IPR011050 -
Cam03g0333 411 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Cam03g0333 411 PRINTS Pollen allergen Amb family signature 382 405 IPR018082 -
Cam03g0333 411 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Cam03g0333 411 PRINTS Pollen allergen Amb family signature 353 377 IPR018082 -
Cam03g0333 411 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Cam03g0333 411 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Cam03g0333 411 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Cam03g0333 411 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Cam03g0333 411 SMART amb_all 137 334 IPR002022 -
Cam03g0333 411 FunFam Pectate lyase 62 404 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2231 Cam-Chr1:34780681 Cam03g0333 Cam-Chr3:4514431 8.00E-124 dispersed
Cam03g0333 Cam-Chr3:4514431 Cam08g2221 Cam-Chr8:27475673 7.70E-189 dispersed
Cam03g0333 Cam-Chr3:4514431 Cam05g0405 Cam-Chr5:3733631 4.00E-177 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0333 K01728 - csv:101209736 778.859