Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0336 ATGCCTCTCAAGACCGAACATGGAGCATCCGACAGCTCCCTCGATGAGCACTCCAAGATGGTCCATTCTTCTAAAGTCGTCGTTCTTGCTGACCTCAACGTTGATCCTCCAGAAATGGATGACGACAGTTCCGTTCACGTTTCAGCTTCGACTATCTCCAGGTTATCTATGGATGAGAGCAATCAAGACAAAATTGTGGCAATTTGCAAGGATACTAATTCAATGGAAGTTGAAGGTAGACGTTTAAGCAAAATTGGAAAGTGCCGTTCAAGAAATAATAAGGTAGAGTACTCTCTTGATTCTGCAGCTGATGTAGATGGTGATCAACCTGGTCCAGGTGTTTCAACTTCACGTGAAGAAAAAGTCAGCAGCCTCAAAACTGGTTTAGTTCATGTAGCAAGAAAGATGCCAAAAAATGCTCACGCTCATTTCATTCTTGGCCTCATGTACCAGAGGTTGGGCCAGCCACAAAAGGCAGTTTTAGCATATGAGAAGGCAGAGGAGATCCTACTCCAAAGTGATGTTGAGATTCAGAGACCAGAGTTGCTCTCATTGGTCCAAATTCATCATGCACAGTGTCTCCTCCTAGAAAGTGCAGGGGATAATAGTTCAAACAAAGAACTTGAACAGGAGGAGCTTGATGAGATTTTTTCTAAACTTGAGCATTCAATGCAATCTGATGTTAGACAGGCAGCTGTGTGGAATACCCTAGGCTTGTTACTTCTTACAACTGGTCGAGTGAAGAGTGCTATTTCAGTGTTGTCATCCCTGTTGGCCATTGTTCCTAACAACTATGATTGCCTTGGAAACCTTGGAATTGCCTATCTTCAAAGTGGAAATATGGAACTATCAGAAAAATGTTTTCAAGAATTGATCCTGACGGATCAAAATCATCCTGCTGCCCTCATCAACTATGCTGCTTTTCTCTTGTGCAAGTATGGTTCTACTGTTGTAGGTGCTGGAGCAAATGCCGGTGAAGGTGGTGTTGATGAGAAGGTTGTAGGCATGAATGTTGCAAAGGAATGTTTGCTAGCGACCCTAAAGGTAGATCCAAAAGCAGCACATGCCTGGGCAAATCTTGCTAATGTGTATTTTGTGACTGGGGACCACAGAAGTTCTGCCAAGTGCTTGGAGAAGGGAGCAAAACTGGAGCCAAATTGCATGTCTATGAGATATGCCGTTGCTATGCACCGACTTAAGGATGCAGAAAGGTCTCAAGATCGTAGTGAGCAACTCTCCTGGGCTGGAAATGAAATGGCCTCAATTATTAGAGACGGAGATGGCTCGACAATCGATCATTCTATAGCATGGGCTGGGCTTTCCATGGTTCACAAGACTCAACATGAAATTGCTGCAGGATTTCGTACAGATCAGAGTGATCTGAGAGAAAAGGAAGAACACGCTGTCTACAGTTTAAATCAGGCAATAGCTGAGAACCCAGATGATGCTGTTCAGTGGCATCAATTCGGCCTCCATAGCCTCTGTACGCGAGAATTTAAAACATCACAAAGATACCTCAAAGCTGCAATTGCCCGCATCAAGAACTGTAGTTTTGCATGGTCAAACCTAGGTATCTCGTTGCAACTCTCAGACAACCCGACACAGGCTGAAGAAGTATACAAGAAAGCTTTGTCATTGGTGGCCACAGAACAAGCACATACTGTATTTTGTAACCTCGGAAATCTATATCGACAACAAAAGCAGTATGAACGTGCCAAAGCTATGTTCTCAAAGTCTCTGGAACTGCAACCCGGTTATGCACCTGCCTTTAACAATCTAGGATTAGTGTTTATTGCGGAGGGTCAATGGGAGGAGGCTAAGTATTGTTTTGAGAAAGCTCTCGAGGCGGATCCGTTACTCGATTCAGCTAAGTCGAACTTGATTAAAACAAATATGCATAATATTTTCTTGCAAGGAAATGTAGAGCAGCATTTACTTCAATTGGAGATTTCTTCCCAGGCTAACTTCCTTGATGGAACCAATCTGTTAATTAGGATCATAGGTTCAATTAGCTTCGGCAAGACCAGAAGCTCCGGCGAAGTATATACGGCCATTGGAGGTCGGCGAAGGATGAAACGCTTCTTTAAACCTATAGAAAAGGGAGGGTCTTCGAAGAAAGCGGCTCTCTCACCTTCGCTGAAAGATGATGATGATTCGGAAGCATCAGCGCCTGACAAGAAAGAGCCTCGTAAATTTGTAACTTGGAATGCAAATAGTTTACTTCTCCGAGTTAAAAACGACTGGCCGGAGTTCACCAAGTTTGTCACCAACCTTGATCCGGATGTTATCGCCATACAAGAAGTAAGAATTCCTGCAGCAGGTTCAAAAGGTGCACCTAAAAACCAAGGAGAGTTGAAAGATGACACAAGCACATCACGGGAAGAGAAGCAGATGTTGATGCGTGCTCTTTCCAGTCCACCCTTTGCAAATTATCGTGTTTGGTGGTCTCTTTCAGATTCCAAGTATGCTGGAACTGCATTGTTTATAAAAAAGTGTTCTCCGCCAAAAAATGTTTTCTTCAACCTAGACAGAATAGCTTCAAAGCATGAAGTGGACGGTCGTGTAATTTTAGCTGAATTCGAGACATTTCGTTTATTGAACACATATTCACCAAATAATGGATGGAAGGAAGAGGAGAACTCTTTTAAAAGGAGAAGGAAATGGGATAAGAGAATGTTGGAGTTTGTTATCCAATCTTCTGATAAGCCTCTTATATGGTGTGGTGACCTGAATGTTAGTCATGAAGAGATTGATGTGAGCCATCCAGATTTTTTCAGCGCAGCAAAACTTAATGGGTACATACCCCCAAATAAGGAGGATTGTGGGCAGCCTGGATTTACCTTGGCTGAAAGGAAGCGCTTCAATTCTATATTGAAGGAGGGAAAGCTGATAGATGCATATAGATTCCTTCACGAGGAGAAAGACATGGAGCGTGGCTTTTCTTGGTCTGGGCACCCCATTGGAAAGTATCGAGGCAAAAGGATGAGAATTGACTATTTCTTAGTTTCCGAGAGTCTCATAGGTAGGATTGTTTCATGTGAGATGCATGGGCAAGGGATTGAATTACAAGGTTTCTACGGAAGCGATCATTGCCCCGTTTCTCTTGAGCTGTCAGAAGCCAGTTCTTGCCCAGAGTCTCAAAAAAACTAA 3150 43.24 MPLKTEHGASDSSLDEHSKMVHSSKVVVLADLNVDPPEMDDDSSVHVSASTISRLSMDESNQDKIVAICKDTNSMEVEGRRLSKIGKCRSRNNKVEYSLDSAADVDGDQPGPGVSTSREEKVSSLKTGLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVLAYEKAEEILLQSDVEIQRPELLSLVQIHHAQCLLLESAGDNSSNKELEQEELDEIFSKLEHSMQSDVRQAAVWNTLGLLLLTTGRVKSAISVLSSLLAIVPNNYDCLGNLGIAYLQSGNMELSEKCFQELILTDQNHPAALINYAAFLLCKYGSTVVGAGANAGEGGVDEKVVGMNVAKECLLATLKVDPKAAHAWANLANVYFVTGDHRSSAKCLEKGAKLEPNCMSMRYAVAMHRLKDAERSQDRSEQLSWAGNEMASIIRDGDGSTIDHSIAWAGLSMVHKTQHEIAAGFRTDQSDLREKEEHAVYSLNQAIAENPDDAVQWHQFGLHSLCTREFKTSQRYLKAAIARIKNCSFAWSNLGISLQLSDNPTQAEEVYKKALSLVATEQAHTVFCNLGNLYRQQKQYERAKAMFSKSLELQPGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSAKSNLIKTNMHNIFLQGNVEQHLLQLEISSQANFLDGTNLLIRIIGSISFGKTRSSGEVYTAIGGRRRMKRFFKPIEKGGSSKKAALSPSLKDDDDSEASAPDKKEPRKFVTWNANSLLLRVKNDWPEFTKFVTNLDPDVIAIQEVRIPAAGSKGAPKNQGELKDDTSTSREEKQMLMRALSSPPFANYRVWWSLSDSKYAGTALFIKKCSPPKNVFFNLDRIASKHEVDGRVILAEFETFRLLNTYSPNNGWKEEENSFKRRRKWDKRMLEFVIQSSDKPLIWCGDLNVSHEEIDVSHPDFFSAAKLNGYIPPNKEDCGQPGFTLAERKRFNSILKEGKLIDAYRFLHEEKDMERGFSWSGHPIGKYRGKRMRIDYFLVSESLIGRIVSCEMHGQGIELQGFYGSDHCPVSLELSEASSCPESQKN 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4554814 4571406 + CaPI482276_03g003360.1 Cam03g0336 122602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0336 1049 SMART tpr_5 587 620 IPR019734 GO:0005515(InterPro)
Cam03g0336 1049 SMART tpr_5 517 550 IPR019734 GO:0005515(InterPro)
Cam03g0336 1049 SMART tpr_5 354 387 IPR019734 GO:0005515(InterPro)
Cam03g0336 1049 SMART tpr_5 553 586 IPR019734 GO:0005515(InterPro)
Cam03g0336 1049 SMART tpr_5 140 173 IPR019734 GO:0005515(InterPro)
Cam03g0336 1049 SMART tpr_5 231 264 IPR019734 GO:0005515(InterPro)
Cam03g0336 1049 SMART tpr_5 265 298 IPR019734 GO:0005515(InterPro)
Cam03g0336 1049 ProSiteProfiles TPR repeat profile. 587 620 IPR019734 GO:0005515(InterPro)
Cam03g0336 1049 Pfam Tetratricopeptide repeat 140 169 IPR019734 GO:0005515(InterPro)
Cam03g0336 1049 Pfam Tetratricopeptide repeat 354 387 IPR019734 GO:0005515(InterPro)
Cam03g0336 1049 MobiDBLite consensus disorder prediction 101 121 - -
Cam03g0336 1049 ProSiteProfiles AP endonucleases family 1 profile. 730 1039 IPR004808 GO:0004518(InterPro)|GO:0006281(InterPro)
Cam03g0336 1049 ProSiteProfiles TPR repeat region circular profile. 553 584 - -
Cam03g0336 1049 SUPERFAMILY TPR-like 464 618 IPR011990 GO:0005515(InterPro)
Cam03g0336 1049 MobiDBLite consensus disorder prediction 781 795 - -
Cam03g0336 1049 Gene3D Tetratricopeptide repeat domain 127 184 IPR011990 GO:0005515(InterPro)
Cam03g0336 1049 CDD Ape1-like_AP-endo 731 1037 - -
Cam03g0336 1049 NCBIfam exodeoxyribonuclease III 731 1037 IPR004808 GO:0004518(InterPro)|GO:0006281(InterPro)
Cam03g0336 1049 Gene3D Tetratricopeptide repeat domain 552 631 IPR011990 GO:0005515(InterPro)
Cam03g0336 1049 ProSiteProfiles TPR repeat profile. 231 264 IPR019734 GO:0005515(InterPro)
Cam03g0336 1049 FunFam DNA-(apurinic or apyrimidinic site) lyase 702 1039 - -
Cam03g0336 1049 Pfam Endonuclease/Exonuclease/phosphatase family 733 1030 IPR005135 GO:0003824(InterPro)
Cam03g0336 1049 MobiDBLite consensus disorder prediction 1 21 - -
Cam03g0336 1049 MobiDBLite consensus disorder prediction 774 797 - -
Cam03g0336 1049 SUPERFAMILY TPR-like 137 390 IPR011990 GO:0005515(InterPro)
Cam03g0336 1049 ProSiteProfiles TPR repeat profile. 553 586 IPR019734 GO:0005515(InterPro)
Cam03g0336 1049 SUPERFAMILY DNase I-like 731 1037 IPR036691 -
Cam03g0336 1049 Gene3D Tetratricopeptide repeat domain 197 312 IPR011990 GO:0005515(InterPro)
Cam03g0336 1049 Pfam Tetratricopeptide repeat 554 616 - -
Cam03g0336 1049 MobiDBLite consensus disorder prediction 710 728 - -
Cam03g0336 1049 Gene3D Tetratricopeptide repeat domain 335 424 IPR011990 GO:0005515(InterPro)
Cam03g0336 1049 ProSiteProfiles TPR repeat profile. 140 173 IPR019734 GO:0005515(InterPro)
Cam03g0336 1049 MobiDBLite consensus disorder prediction 700 728 - -
Cam03g0336 1049 ProSiteProfiles TPR repeat region circular profile. 587 618 - -
Cam03g0336 1049 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 27 630 - -
Cam03g0336 1049 Gene3D Endonuclease/exonuclease/phosphatase 698 1039 IPR036691 -
Cam03g0336 1049 Gene3D Tetratricopeptide repeat domain 466 551 IPR011990 GO:0005515(InterPro)
Cam03g0336 1049 ProSiteProfiles TPR repeat profile. 354 387 IPR019734 GO:0005515(InterPro)
Cam03g0336 1049 Pfam Tetratricopeptide repeat 242 301 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0336 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g891 Blo04g00709 . . . . . . . Cmo13g00807 . . . . . . Cpe20g00195 . . . . . . . . . . . . . . . Cone2ag0948 . . . Lsi02g00463 . Chy12g01207 Cme12g01628 . . . . . Bpe15g00664 Bma03g00757 . . . . Cma13g00776 . Car13g00622 . . . Bhi08g01692 Tan05g2896 . Lac10g0535 . . . Cla03g00320 Cam03g0336 Cec03g0328 Cco03g0342 Clacu03g0338 Cmu03g0944 Cre03g0637 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009614 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32